<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1803" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2010-10-04</deposition>
         <header_release>2010-10-08</header_release>
         <map_release>2010-11-01</map_release>
         <update>2012-10-24</update>
      </key_dates>
      <title>Conformational flexibility of RNA polymerase III during transcriptional elongation</title>
      <authors_list>
         <author>Fernandez-Tornero C</author>
         <author>Bottcher B</author>
         <author>Rashid UJ</author>
         <author>Steuerwald U</author>
         <author>Florchinger B</author>
         <author>Devos DP</author>
         <author>Lindner D</author>
         <author>Muller CW</author>
      </authors_list>
      <keywords>Transcription, RNA polymerase III, elongation complex, transcription initiation, transcription elongation, transcription termination</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Fernandez-Tornero C</author>
               <author order="2">Bottcher B</author>
               <author order="3">Rashid UJ</author>
               <author order="4">Steuerwald U</author>
               <author order="5">Florchinger B</author>
               <author order="6">Devos DP</author>
               <author order="7">Lindner D</author>
               <author order="8">Muller CW</author>
               <title>Conformational flexibility of RNA polymerase III during transcriptional elongation.</title>
               <journal>EMBO J.</journal>
               <volume>29</volume>
               <first_page>3762</first_page>
               <last_page>3772</last_page>
               <year>2010</year>
               <external_references type="PUBMED">20967027</external_references>
               <external_references type="DOI">doi:10.1038/emboj.2010.266</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>RNA Polymerase III elongation complex</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>RNA Polymerase III elongation complex</name>
            <details>Sample was monodisperse</details>
            <oligomeric_state>Transcription bubble, RNA Pol III complex</oligomeric_state>
            <number_unique_components>2</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">0.7</experimental>
               <theoretical units="MDa">0.7</theoretical>
               <method>Native mass spectrometry</method>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <other_macromolecule macromolecule_id="1">
            <name>Transcription bubble</name>
            <natural_source database="NCBI">
               <organism ncbi="32630">synthetic construct</organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.03</theoretical>
            </molecular_weight>
            <details>An artificial transcription bubble was prepared as described (Kettenberger et al., 2004) and was added in five molar excess to purified Pol III. Unbound transcription bubble was subsequently removed using size exclusion chromatography</details>
            <classification>DNA/RNA</classification>
            <structure>OTHER</structure>
            <synthetic_flag>true</synthetic_flag>
         </other_macromolecule>
         <protein_or_peptide macromolecule_id="2">
            <name synonym="Pol III">RNA Polymerase III</name>
            <natural_source database="NCBI">
               <organism ncbi="4932">Saccharomyces cerevisiae</organism>
               <synonym_organism>Baker's yeast</synonym_organism>
               <cellular_location>Nuclear</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.7</experimental>
               <theoretical units="MDa">0.7</theoretical>
            </molecular_weight>
            <oligomeric_state>One complex of 17 different polypeptides</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.5</concentration>
               <buffer>
                  <ph>7.5</ph>
                  <details>10 mM Tris pH 7.5, 100 mM ammonium sulphate, 10 mM DTT.</details>
               </buffer>
               <grid>
                  <details>Lacey carbon film</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">100</chamber_humidity>
                  <instrument>HOMEMADE PLUNGER</instrument>
                  <details>Vitrification instrument: Controlled environment, self-built</details>
                  <method>Blot for 15 s in controlled environment chamber before plunging</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI/PHILIPS CM200FEG</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_cs units="mm">2</nominal_cs>
               <nominal_defocus_min units="&#181;m">1.6</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">4.0</nominal_defocus_max>
               <nominal_magnification>50000.0</nominal_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <temperature>
                  <temperature_average units="K">95</temperature_average>
               </temperature>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>Astigmatism was corrected at 200,000 times magnification</astigmatism>
                  </legacy>
               </alignment_procedure>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>ZEISS SCAI</scanner>
                        <sampling_interval units="&#181;m">14</sampling_interval>
                     </digitization_details>
                     <number_real_images>39</number_real_images>
                     <bits_per_pixel>8.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Eucentric</specimen_holder>
               <tilt_angle_min>0</tilt_angle_min>
               <tilt_angle_max>0</tilt_angle_max>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>ca. 23892 particles were sorted into four groups according to the compositional differences. The reconstruction shows the most complete species and represents ca. 49% of the particle population.</details>
            <ctf_correction>
               <details>Each particle, phase flipped</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">16.5</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>SPIDER</name>
                  </software>
               </software_list>
               <details>Maps were calculated from defocus groups,and added.</details>
               <number_images_used>11700</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="2849">
      <file>emd_1803.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>90</col>
         <row>90</row>
         <sec>90</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>90</x>
         <y>90</y>
         <z>90</z>
      </spacing>
      <cell>
         <a units="&#8491;">252</a>
         <b units="&#8491;">252</b>
         <c units="&#8491;">252</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-2.65438</minimum>
         <maximum>5.2505</maximum>
         <average>0.0844874</average>
         <std>0.564534</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">2.8</x>
         <y units="&#8491;">2.8</y>
         <z units="&#8491;">2.8</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.86</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>RNA Polymerase III elongation complex</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1803::::</details>
   </map>
</emd>