Cryo electron tomography of human choriocarcinoma cells

2024-03-27 REL PDBe PDBe PDBe 2023-06-29 2023-07-12 2023-07-12 2024-03-27 Wellcome Trust 212980/Z/18/Z United Kingdom Cryo electron tomography of human choriocarcinoma cells Tun WM Yee NB-Y Ho EML Darrow MC Basham M human, choriocarcinoma, cell, trophoblast, CELL CYCLE Yee NB Ho EML Tun W Smith JLR Dumoux M Grange M Darrow MC Basham M Ot2Rec: A semi-automatic, extensible, multi-software tomographic reconstruction workflow. Biol Imaging 3 e10 e10 2023 38487693 doi:10.1017/S2633903X23000107 2633-903X JEG-3 human choriocarcinoma cell line JEG-3 human choriocarcinoma cell line 0 Homo sapiens tomography cell 7.4 Quantifoil R2/2 200 ETHANE 80 LEICA EM GP OTHER OTHER 30 0.3 0.00000000000001 105 1000 200

Note: initial thickness and duration of FIB milling was not recorded.. The value given for _em_focused_ion_beam.instrument is ThermoFisher Scios. This is not in a list of allowed values {'OTHER', 'DB235'} so OTHER is written into the XML file.

FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 4.0 8.0 64000.0 TFS FALCON 4i (4k x 4k) 1.48 1

Images were motion-corrected with MotionCor2 1.4.0 using Ot2Rec.

BACK PROJECTION IMOD 4.11.1 Weighted back-projection

Bin factor 8 applied.

41 emd_17767.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 -256 512 512 512 7659.52 7659.52 7659.52 90.0 90.0 90.0 X Y Z -493.020230000000026 491.525539999999978 11.63147 63.113579999999999 14.96 14.96 14.96 AUTHOR ::::EMDATABANK.org::::EMD-17767:::: IMOD weighted back-projection reconstruction of tilt series from Position 09 using Ot2Rec.