2025-01-22 REL PDBe PDBe PDBe 2023-06-20 2024-08-14 2024-08-14 2025-01-22 Agence Nationale de la Recherche (ANR) ANR-22-CE11-0023-01 France ATIP-Avenir 2015 France Helical reconstruction of CHIKV nsP3 helical scaffolds Reguera J Hons M Zimberger C Ptchelkine D Jones R Desfosses A Helical scaffold, Replication complex, Alpha granules, Viral factories, VIRAL PROTEIN Kril V Hons M Amadori C Zimberger C Couture L Bouery Y Burlaud-Gaillard J Karpov A Ptchelkine D Thienel AL Kummerer BM Desfosses A Jones R Roingeard P Meertens L Amara A Reguera J Alphavirus nsP3 organizes into tubular scaffolds essential for infection and the cytoplasmic granule architecture. Nat Commun UK 15 8106 8106 2024 39285216 doi:10.1038/s41467-024-51952-z 2041-1723 8phz FULLOVERLAP Helical scaffold assembly of CHIKV nsP3 mediated by its Unique alphavirus domain. Helical scaffold assembly of CHIKV nsP3 mediated by its Unique alphavirus domain. 0 1 Chikungunya virus strain S27-African prototype 220.25 Non-structural protein 3 Chikungunya virus strain S27-African prototype 0.057418207 5 Trichoplusia ni LEVO APSYRVKRMDIAKNDEECVVNAANPRGLPGDGVCKAVYKKWPESFKNSATPVGTAKTVMCGTYPVIHAVGPNFSNYSESE GDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQSLNHLFTAMDSTDADVVIYCRDKEWEKKISEAIQMRT QVELLDEHISIDCDVVRVHPDSSLAGRKGYSTTEGALYSYLEGTRFHQTAVDMAEIYTMWPKQTEANEQVCLYALGESIE SIRQKCPVDDADASSPPKTVPCLCRYAMTPERVTRLRMNHVTSIIVCSSFPLPKYKIEGVQKVKCSKVMLFDHNVPSRVS PREYRPSQESVQEASTTTSLTHSQFDLSVDGKILPVPSDLDADAPALEPALDDGAIHTLPSATGNLAAVSDWVMSTVPVA PPRRRRGRNLTVTCDEREGNITPMASVRFFRAELCPVVQETAETRDTAMSLQAPPSTATELSHPPISFGAPSETFPITFG DFNEGEIESLSSELLTFGDFLPGEVDDLTDSDWSTCSDTDDEL Q8JUX6 3.1.3.84 ZINC ION 6.5409e-05 5 ZN helical helicalArray 7.5 ETHANE-PROPANE
his sample was heterogeneous in lenght
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.8 2.5 GATAN K3 BIOQUANTUM (6k x 4k) 18.1 1 2.782 164.175 C1 2.35 FSC 0.143 CUT-OFF 807973 Alphafold was used to have a model of the CHIKV AUD domain NOT APPLICABLE emd_17678.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 408 408 408 0 0 0 408 408 408 432.47998 432.47998 432.47998 90.0 90.0 90.0 X Y Z -3.9324183 6.195276 0.003651084 0.10193817 1.06 1.06 1.06 0.792 AUTHOR emd_17678_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 408 408 408 0 0 0 408 408 408 432.47998 432.47998 432.47998 90.0 90.0 90.0 X Y Z -0.4845315 1.4854547 0.0036510841 0.041967705 1.06 1.06 1.06 AUTHOR This is a local refinement of one side of the tube at 2.36 A res emd_17678_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 408 408 408 0 0 0 408 408 408 432.47998 432.47998 432.47998 90.0 90.0 90.0 X Y Z -0.006049129 0.020177253 0.00000487824 0.0008039268 1.06 1.06 1.06 AUTHOR This is a masked refinement of the perifery of the tube at 2.98 A res emd_17678_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 408 408 408 0 0 0 408 408 408 432.47998 432.47998 432.47998 90.0 90.0 90.0 X Y Z -0.0057082307 0.025959387 0.000026145928 0.0005678516 1.06 1.06 1.06 AUTHOR This is a asked 3D classification at 6.84 A res. emd_17678_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 408 408 408 0 0 0 408 408 408 432.47998 432.47998 432.47998 90.0 90.0 90.0 X Y Z -0.49718645 1.5109403 0.00087223214 0.04444427 1.06 1.06 1.06 AUTHOR emd_17678_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 408 408 408 0 0 0 408 408 408 432.47998 432.47998 432.47998 90.0 90.0 90.0 X Y Z -0.48251683 1.5320411 0.00090409233 0.04429796 1.06 1.06 1.06 AUTHOR