2024-09-25 REL PDBe PDBe PDBe 2023-06-05 2024-07-03 2024-07-03 2024-09-25 Not funded Conformer 3 of the (GroEL)14(GroES)14 complex with two encapsulated, near-native and ordered MetK substrates in the presence of ADP-BeFx Wagner J Beck F Bracher A Caravajal AI Wan W Bohn S Koerner R Baumeister W Fernandez-Busnadiego R Hartl FU Chaperonin, Folding cage, proteostasis, heat shock, ATPase, CHAPERONE Wagner J Carvajal AI Bracher A Beck F Wan W Bohn S Korner R Baumeister W Fernandez-Busnadiego R Hartl FU Visualizing chaperonin function in situ by cryo-electron tomography. Nature UK 633 459 464 2024 39169181 doi:10.1038/s41586-024-07843-w 1476-4687 0006 NATUAS EMD-17421 other EM volume EMD-17420 other EM volume EMD-17422 other EM volume EMD-17563 other EM volume EMD-17564 other EM volume EMD-17565 other EM volume EMD-17566 other EM volume EMD-17567 other EM volume EMD-17568 other EM volume EMD-17570 other EM volume EMD-17571 other EM volume EMD-17572 other EM volume EMD-17573 other EM volume GroEL14-GroES14-MetK2 GroEL14-GroES14-MetK2 0 1 2 3
with bound ADP-BeF3 Mg2+ K+
Escherichia coli 1.03 GroEL Escherichia coli BL21(DE3) Escherichia coli BL21(DE3) LEVO AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREI ELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGI DKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDG TGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAV AKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTV ISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDY DREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALI RVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNA ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAADLGAAGGMGG MGGMGGMM P0A6F5 GroES Escherichia coli BL21(DE3) Escherichia coli BL21(DE3) LEVO MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVK VGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVEA P0A6F9 MetK Escherichia coli BL21(DE3) Escherichia coli BL21(DE3) LEVO MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTS AWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVDRADPLEQGAGDQ GLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDDGKIVG IDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGGPMGDC GLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVS YAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGH FGREHFPWEKTDKAQLLRDAAGLK P0A817 singleParticle particle 10.3 7.4 20.0 C7H15NO4S MOPS 200.0 KCl Potassium chloride 10.0 MgCl2 Magnesium chloride 5.0 C4H10O2S2 Dithiothreitol 30.0 NaF Sodium fluoride 5.0 BeSO4 Beryllium sulfate 1.0 C10H16N5O13P3 Adenosine triphosphate ETHANE-PROPANE 100 277 FEI VITROBOT MARK IV
5.9 mM n-octyl-beta-D-glucopyranoside were added before vitrification.
FEI TITAN KRIOS OTHER BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 0.5 3.0 22500.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 (6k x 4k) 55.0 1 4.4 FSC 0.143 CUT-OFF cryoSPARC 5474 MAXIMUM LIKELIHOOD cryoSPARC 3.1 MAXIMUM LIKELIHOOD cryoSPARC 3.1 emd_17569.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 406.6 406.6 406.6 90.0 90.0 90.0 X Y Z -0.47020283 1.253703 0.0039340565 0.05195546 1.07 1.07 1.07 0.266 AUTHOR 1SX3 PDB experimental model 5OPX PDB experimental model AB INITIO MODEL REAL emd_17569_msk_1.map emd_17569_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 406.6 406.6 406.6 90.0 90.0 90.0 X Y Z -7.7571735 8.061628000000001 0.0018701016 0.978862 1.07 1.07 1.07 AUTHOR emd_17569_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 406.6 406.6 406.6 90.0 90.0 90.0 X Y Z -8.550794 8.059519999999999 0.0018498461 0.97698337 1.07 1.07 1.07 AUTHOR