2025-04-30 REL PDBe INITIAL_RELEASE REPOSITORY STRUCTURE_SUMMARY audit_author citation_author em_admin em_author_list _em_admin.last_update STRUCTURE_SUMMARY em_admin pdbx_entry_details pdbx_modification_feature _em_admin.last_update _pdbx_entry_details.has_protein_modification DATABASE_REFERENCES citation citation_author em_admin _citation.country _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _em_admin.last_update PDBe PDBe 2023-05-25 2024-07-03 2024-07-03 2025-04-30 Swiss National Science Foundation 176154 Switzerland Wellcome Trust WT110068/Z/15/Z United Kingdom Cytochrome bc1 complex (Bos taurus) Phillips BP Barra IMCC Meier TK Rimle L von Ballmoos C Electron Transport Chain, Complex III, Respiratory Complex, MEMBRANE PROTEIN Rimle L Phillips BP Codo Costa Barra IM Arnold N Hennebert C Meier T von Ballmoos C A splendid molecular factory: De- and reconstruction of the mammalian respiratory chain. Proc.Natl.Acad.Sci.USA US 122 e2416162122 e2416162122 2025 40100632 doi:10.1073/pnas.2416162122 1091-6490 0040 PNASA6 8p65 FULLOVERLAP Cytochrome bc1 complex (bos taurus) Cytochrome bc1 complex (bos taurus) 0 1 2 3 4 5 6 7 8 9 10 11
Cytochrome bc1 complex purified natively from bovine heart tissue
Bos taurus 0.486 Cytochrome b-c1 complex subunit 1, mitochondrial Bos taurus Heart 0.049266253999999995 2 LEVO TATYAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVE SMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQG TPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQ ICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLL GAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIA EVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMFWLRF P31800 Cytochrome b-c1 complex subunit 2, mitochondrial Bos taurus Heart 0.046576453 2 LEVO SLKVAPKVKATEAPAGVPPHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGA SSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVI ENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNIRGGLGLSGAKAKYH GGEIREQNGDSLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHEPFDVSAFNASYSDSG LFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQ QIDAVADADVINAAKKFVSGRKSMAASGNLGHTPFIDEL P23004 Cytochrome b Bos taurus Heart 0.04262033999999999 2 LEVO MTNIRKSHPLMKIVNNAFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIR YMHANGASMFFICLYMHVGRGLYYGSYTFLETWNIGVILLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL VEWIWGGFSVDKATLTRFFAFHFILPFIIMAIAMVHLLFLHETGSNNPTGISSDVDKIPFHPYYTIKDILGALLLILALM LLVLFAPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILALIPLLHTSKQRSMMFRPL SQCLFWALVADLLTLTWIGGQPVEHPYITIGQLASVLYFLLILVLMPTAGTIENKLLKW P00157 Cytochrome c1, heme protein, mitochondrial Bos taurus Heart 0.027323276999999997 2 LEVO SDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEAKALAEEVEVQDGPNEDGEM FMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGM APPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKLAYRPP K P00125 7.1.1.8 Cytochrome b-c1 complex subunit Rieske, mitochondrial Bos taurus Heart 0.02164058 2 LEVO SHTDIKVPDFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSD IPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPC HGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG P13272 7.1.1.8 Cytochrome b-c1 complex subunit 7 Bos taurus Heart 0.013502387 2 LEVO MAGRPAVSASSRWLEGIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQ WTKYEEDKSYLEPYLKEVIRERKEREEWAKK P00129 Cytochrome b-c1 complex subunit 8 Bos taurus 0.009737223 2 LEVO MGRQFGHLTRVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNPAAYEN DR P13271 Cytochrome b-c1 complex subunit 6, mitochondrial Bos taurus 0.009189115999999999 2 LEVO GDPKEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHKLFNSLK P00126 Cytochrome b-c1 complex subunit 9 Bos taurus 0.005497398 2 LEVO MLSVAARSGPFAPVLSATSRGVAGALRPLVQAAVPATSESPVLDLKRSVLCRES P13272 Cytochrome b-c1 complex subunit 9 Bos taurus Heart 0.007469621 2 LEVO MVAPTLTARLYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEGKLWKHIKHKYENKE P00130 Cytochrome b-c1 complex subunit 10 Bos taurus Heart 0.005705663999999999 2 LEVO MLTRFLGPRYRQLARNWVPTASLWGAVGAVGLVWATDWRLILDWVPYIN P07552 PROTOPORPHYRIN IX CONTAINING FE 0.000616487 4 HEM HEME C 0.0006185030000000001 2 HEC FE2/S2 (INORGANIC) CLUSTER 0.00017581999999999998 2 FES singleParticle particle 0.1 7.5 PELCO Ultrathin Carbon with Lacey Carbon COPPER 400 CARBON CONTINUOUS 50.0 GLOW DISCHARGE AIR ETHANE 95 277 FEI VITROBOT MARK IV
Blot time of 4s with blot force of -3.
Monodisperse sample was purified un-tagged from bovine heart tissue and reconstituted into peptidiscs before freezing.
 TFS GLACIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 100.0 2.7 0.5 0.5 2.75 2.75 85000.0 85000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 80.0 90.5 10.0 OTHER TFS Selectris 10
Tuned using TFS Sherpa Software
 FEI FALCON IV (4k x 4k) 4000 4000 3947 8.0 40.0 1 154469 1 C2 FOURIER SPACE 3.0 FSC 0.143 CUT-OFF cryoSPARC 4.0.0
FSC calculated in PDB server.
140138 MAXIMUM LIKELIHOOD cryoSPARC 4.0.0 MAXIMUM LIKELIHOOD cryoSPARC 4.0.0
Non-uniform refinement in CryoSPARC v4.0.0
 10 20100.0 cryoSPARC 4.0.0 emd_17461.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 438.6 438.6 438.6 90.0 90.0 90.0 Z Y X -22.986205999999999 44.526221999999997 0.000000000001944 1.0 1.462 1.462 1.462 6.5 AUTHOR Model-based sharpened map of cytochrome bc1 complex purified natively from bovine heart tissue. 6FO2 PDB experimental model FLEXIBLE FIT 96.900000000000006 emd_17461_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 438.6 438.6 438.6 90.0 90.0 90.0 X Y Z -0.35933033 0.95418006 0.00013950015 0.029172366 1.462 1.462 1.462 AUTHOR Half map B of locally filtered bovine cytochrome bc1 complex, produced in CryoSPARC. emd_17461_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 438.6 438.6 438.6 90.0 90.0 90.0 X Y Z -0.35131258 0.9647833 0.00015530089 0.029270755 1.462 1.462 1.462 AUTHOR Half map A of locally filtered bovine cytochrome bc1 complex, produced in CryoSPARC.