2024-07-31 REL PDBe PDBe PDBe 2023-05-22 2024-01-17 2024-01-17 2024-07-31 Not funded Cryo-electron tomogram of isolated Vaccinia Virus cores Datler J Hansen JM Thader A Schloegl A Hodirnau VV Schur FKM Poxvirus, Vaccinia Virus, core, cryo-electron tomography, AlphaFold, VIRAL PROTEIN Datler J Hansen JM Thader A Schlogl A Bauer LW Hodirnau VV Schur FKM Multi-modal cryo-EM reveals trimers of protein A10 to form the palisade layer in poxvirus cores. Nat.Struct.Mol.Biol. US 31 1114 1123 2024 38316877 doi:10.1038/s41594-023-01201-6 1545-9985 EMD-17410 other EM volume EMD-17412 other EM volume EMD-17411 other EM volume EMD-17413 other EM volume Vaccinia virus Western Reserve Vaccinia virus Western Reserve 0 1
Purified viral cores from HeLa cells infected with Vaccinia Virus Western Reserve.
Vaccinia virus Western Reserve VIRION STRAIN false false tomography particle 9.0 1.0 Tris-HCl Tris hydrochloride
diluted 1:1 with 0.25% Trypsin (final concentration 0.125%) and 1:1 4% paraformaldehyde (final concentration 2%) in 1 mM Tris-HCl.
 Quantifoil R2/2 COPPER 300 CARBON HOLEY GLOW DISCHARGE AIR ETHANE 80 277 LEICA EM GP
Leica GP2.
intact and disrupted viral cores
Aurion Immuno Gold Reagents 10 NO SECTIONING FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 2.361 2.361 64000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Bioquantum 10
Cryo-electron tomography data was collected with the SerialEM software package version 3.8 (Mastronarde 2005). New gain reference images were collected before data acquisition. DigitalMicrograph 3.4.3 as integrated into the Gatan Microscopy Suite v3.3 (Gatan) was used for filter tuning and SerialEM for microscope tuning.
GATAN K3 BIOQUANTUM (6k x 4k) 5760 4092 158.0
Images were collected in movie-mode with 10 frames
 1 BACK PROJECTION IMOD IsoNET 0.2
Tomogram was cropped and IsoNET corrected
43 emd_17414.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 600 187 0 0 0 380 600 187 4198.24 6628.8003 2065.976 90.0 90.0 90.0 X Y Z -7.8389125 2.6801245 -0.3979616 0.28617632 11.048 11.048 11.048 AUTHOR IsoNet corrected cryo-electron tomogram of isolated Vaccinia Virus cores