2023-10-18 REL PDBe PDBe PDBe 2023-05-11 2023-10-18 2023-10-18 2023-10-18 Agence Nationale de la Recherche (ANR) ANR-18-CE11-0006-01 France Agence Nationale de la Recherche (ANR) ANR-21-CE29-0022 France Agence Nationale de la Recherche (ANR) ANR-15-IDEX-02 France Centre National de la Recherche Scientifique (CNRS) ATIP-Avenir program France Human N-deacetylase/N-sulfotransferase 1 homodimer Vallet SD Lortat-Jacob H Wild R heparan sulfate, bifunctional enzyme, Golgi, de-acetylatase & sulfotransferease, BIOSYNTHETIC PROTEIN Vallet SD Annaval T Vives RR Richard E Henault J Le Narvor C Bonnaffe D Priem B Wild R Lortat-Jacob H Functional and structural insights into human N-deacetylase/N-sulfotransferase activities Proteoglycan Res 1 2023 doi:10.1002/pgr2.8 NDST1 homodimer NDST1 homodimer 0 1 Homo sapiens 0.22 N-deacetylase/N-sulfotransferase 1 Homo sapiens
Human NDST1 homodimer (residues 43-882), containing a linker and a 8-His tag at the C-terminus
Homo sapiens LEVO GASRGLEPSADAPEPDCGDPPPVAPSRLLPLKPVQAATPSRTDPLVLVFVESLYSQLGQE VVAILESSRFKYRTEIAPGKGDMPTLTDKGRGRFALIIYENILKYVNLDAWNRELLDKYC VAYGVGIIGFFKANENSLLSAQLKGFPLFLHSNLGLKDCSINPKSPLLYVTRPSEVEKGV LPGEDWTVFQSNHSTYEPVLLAKTRSSESIPHLGADAGLHAALHATVVQDLGLHDGIQRV LFGNNLNFWLHKLVFVDAVAFLTGKRLSLPLDRYILVDIDDIFVGKEGTRMKVEDVKALF DTQNELRAHIPNFTFNLGYSGKFFHTGTNAEDAGDDLLLSYVKEFWWFPHMWSHMQPHLF HNQSVLAEQMALNKKFAVEHGIPTDMGYAVAPHHSGVYPVHVQLYEAWKQVWSIRVTSTE EYPHLKPARYRRGFIHNGIMVLPRQTCGLFTHTIFYNEYPGGSSELDKIINGGELFLTVL LNPISIFMTHLSNYGNDRLGLYTFKHLVRFLHSWTNLRLQTLPPVQLAQKYFQIFSEEKD PLWQDPCEDKRHKDIWSKEKTCDRFPKLLIIGPQKTGTTALYLFLGMHPDLSSNYPSSET FEEIQFFNGHNYHKGIDWYMEFFPIPSNTTSDFYFEKSANYFDSEVAPRRAAALLPKAKV LTILINPADRAYSWYQHQRAHDDPVALKYTFHEVITAGSDASSKLRALQNRCLVPGWYAT HIERWLSAYHANQILVLDGKLLRTEPAKVMDMVQKFLGVTNTIDYHKTLAFDPKKGFWCQ LLEGGKTKCLGKSKGRKYPEMDLDSRAFLKDYYRDHNIELSKLLYKMGQTLPTWLREDLQ NTRNNNNNNGHHHHHHHH P52848 2.8.2.8 singleParticle particle 0.3 6.5 8.0 MES 2-Morpholinoethanesulfonic acid 150.0 NaCl sodium chloride Quantifoil R1.2/1.3 COPPER 300 CARBON HOLEY GLOW DISCHARGE AIR
Current: 25 mA
 ETHANE 100 277 FEI VITROBOT MARK IV
Blotted for 4 s with a blot force of 0.
Protein eluted as monodisperse peak from size exclusion chromatography column
 TFS GLACIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 50.0 2.7 1.0 2.2 36000.0 NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 1-44 1 3038 4.4 38.9
Dataset was collected at a 30 degrees stage tilt angle
 1 3554427 4.5 FSC 0.143 CUT-OFF cryoSPARC 3.3.1 non-uniform refinement 221316 ANGULAR RECONSTITUTION cryoSPARC 3.3.1 ab initio ANGULAR RECONSTITUTION cryoSPARC 3.3.1 non-uniform refinement cryoSPARC 3.3.1 ab initio reconstruction emd_17349.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 360.0 360.0 360.0 90.0 90.0 90.0 X Y Z -0.83742154 1.2649331 0.00012342552 0.028968407 1.125 1.125 1.125 0.262 AUTHOR EM map of human NDST1 homodimer 65-882 AlphaFold in silico model
Model of NDST1 homodimer was predicted using AlphaFold2
 FLEXIBLE FIT
CCC 0.658
cross-correlation coefficient REAL emd_17349_msk_1.map emd_17349_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 360.0 360.0 360.0 90.0 90.0 90.0 X Y Z -0.43474278 0.83253783 0.0004418079 0.028734403 1.125 1.125 1.125 AUTHOR Half map B from final non-uniform refinement emd_17349_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 360.0 360.0 360.0 90.0 90.0 90.0 X Y Z -0.41934323 0.81089795 0.00044797797 0.02859072 1.125 1.125 1.125 AUTHOR Half map A from final non-uniform refinement