<emd emdb_id="EMD-1731" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2010-05-14</deposition>
            <header_release>2010-06-28</header_release>
            <map_release>2010-11-01</map_release>
            <update>2015-12-23</update>
        </key_dates>
        <title>The microtubule nucleating gamma-tubulin small complex assembles into a structure with microtubule-like thirteen fold symmetry</title>
        <authors_list>
            <author>Kollman JM</author>
            <author>Polka JK</author>
            <author>Zelter A</author>
            <author>Davis TN</author>
            <author>Agard DA</author>
        </authors_list>
        <keywords>Microtubule, nucleation, tubulin, filament</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Kollman JM</author>
                    <author order="2">Polka JK</author>
                    <author order="3">Zelter A</author>
                    <author order="4">Davis TN</author>
                    <author order="5">Agard DA</author>
                    <title>Microtubule nucleating gamma-TuSC assembles structures with 13-fold microtubule-like symmetry.</title>
                    <journal>NATURE</journal>
                    <volume>466</volume>
                    <first_page>879</first_page>
                    <last_page>882</last_page>
                    <year>2010</year>
                    <external_references type="PUBMED">20631709</external_references>
                    <external_references type="DOI">doi:10.1038/nature09207</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>5fm1</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>Gamma-tubulin small complex in complex with Spc110p(1-220)</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>Gamma-tubulin small complex in complex with Spc110p(1-220)</name>
                <details>The stoichiometry of gamma-TuSC to Spc110p is not known.</details>
                <number_unique_components>4</number_unique_components>
            </sample_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name synonym="gamma-tubulin">Tub4p</name>
                <natural_source database="NCBI">
                    <organism ncbi="4932">Saccharomyces cerevisiae</organism>
                    <synonym_organism>Baker's yeast</synonym_organism>
                    <cellular_location>Spindle pole body</cellular_location>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.0526</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <oligomeric_state>Helical filament</oligomeric_state>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism>Spodoptera frugiperda (baculovirus infected)</recombinant_organism>
                    <recombinant_plasmid>pAZ37</recombinant_plasmid>
                </recombinant_expression>
                <sequence>
                    <external_references type="INTERPRO">IPR002454</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name synonym="Spindle pole body component p97">Spc97p</name>
                <natural_source database="NCBI">
                    <organism ncbi="4932">Saccharomyces cerevisiae</organism>
                    <synonym_organism>Baker'syeast</synonym_organism>
                    <cellular_location>Spindle pole body</cellular_location>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.0968</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <oligomeric_state>Helical filament</oligomeric_state>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism>Spodoptera frugiperda (baculovirus infected)</recombinant_organism>
                    <recombinant_plasmid>pDV45</recombinant_plasmid>
                </recombinant_expression>
                <sequence>
                    <external_references type="INTERPRO">IPR015698</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="3">
                <name synonym="Spindle pole body component 98p">Spc98p</name>
                <natural_source database="NCBI">
                    <organism ncbi="4932">Saccharomyces cerevisiae</organism>
                    <synonym_organism>Baker's yeast</synonym_organism>
                    <cellular_location>Spindle pole body</cellular_location>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">98.3</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <oligomeric_state>Helical filament</oligomeric_state>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism>Spodoptera frugiperda (baculovirus infected)</recombinant_organism>
                    <recombinant_plasmid>pDV46</recombinant_plasmid>
                </recombinant_expression>
                <sequence>
                    <external_references type="INTERPRO">IPR015696</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="4">
                <name synonym="Spc110p">Spc110p</name>
                <natural_source database="NCBI">
                    <organism ncbi="4932">Saccharomyces cerevisiae</organism>
                    <synonym_organism>Baker's yeast</synonym_organism>
                    <cellular_location>Spindle pole body</cellular_location>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.023</theoretical>
                </molecular_weight>
                <details>Construct includes the first 220 residues of Spc110p</details>
                <number_of_copies>1</number_of_copies>
                <oligomeric_state>Helical filament</oligomeric_state>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism>Spodoptera frugiperda (baculovirus infected)</recombinant_organism>
                    <recombinant_plasmid>pAZ34</recombinant_plasmid>
                </recombinant_expression>
                <sequence />
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>helical</method>
            <aggregation_state>filament</aggregation_state>
            <specimen_preparation_list>
                <helical_preparation preparation_id="1">
                    <concentration units="mg/mL">2</concentration>
                    <buffer>
                        <ph>7.6</ph>
                        <details>100 mM KCl, 1mM GTP, 1mM MgCl2, 2mM EGTA, 40 mM Hepes</details>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <details>Sample was applied to C-FLAT holey carbon grids, blotted, and flash frozen in liquid ethane</details>
                    </staining>
                    <grid>
                        <details>200 mesh copper grid</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <instrument>OTHER</instrument>
                        <details>Vitrification instrument: Vitrobot</details>
                        <method>Blotted 3s before plunging</method>
                    </vitrification>
                </helical_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <helical_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI F20</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <nominal_cs units="mm">2.2</nominal_cs>
                    <nominal_defocus_min units="&#181;m">0.8</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">3.0</nominal_defocus_max>
                    <nominal_magnification>60000.0</nominal_magnification>
                    <specimen_holder_model>OTHER</specimen_holder_model>
                    <alignment_procedure>
                        <legacy>
                            <astigmatism>Astigmatism corrected at 250,000 times magnification</astigmatism>
                        </legacy>
                    </alignment_procedure>
                    <date>2009-09-23</date>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="CCD">TVIPS TEMCAM-F816 (8k x 8k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/&#8491;^2">20</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                    <specimen_holder>Oxford side-entry cryo stage</specimen_holder>
                </helical_microscopy>
            </microscopy_list>
            <helical_processing image_processing_id="1">
                <final_reconstruction>
                    <applied_symmetry>
                        <helical_parameters>
                            <delta_z units="&#8491;">22.2</delta_z>
                            <delta_phi units="deg">54.3</delta_phi>
                        </helical_parameters>
                    </applied_symmetry>
                    <algorithm>OTHER</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">8.0</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>Spider</name>
                        </software>
                    </software_list>
                </final_reconstruction>
                <ctf_correction>
                    <details>Whole micrograph</details>
                </ctf_correction>
                <final_angle_assignment>
                    <details>SPIDER:theta 90 degrees, phi 90 degrees</details>
                </final_angle_assignment>
            </helical_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="128001">
        <file>emd_1731.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>320</col>
            <row>320</row>
            <sec>320</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>320</x>
            <y>320</y>
            <z>320</z>
        </spacing>
        <cell>
            <a units="&#8491;">380.8</a>
            <b units="&#8491;">380.8</b>
            <c units="&#8491;">380.8</c>
            <alpha units="deg">90</alpha>
            <beta units="deg">90</beta>
            <gamma units="deg">90</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-3.00519</minimum>
            <maximum>6.27779</maximum>
            <average>1.00001</average>
            <std>0.999949</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">1.19</x>
            <y units="&#8491;">1.19</y>
            <z units="&#8491;">1.19</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>2.5</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <annotation_details>This is the map of the gamma-tubulin small complex - Spc110p filament.  The filament axis is along the Z axis.</annotation_details>
        <details>::::EMDATABANK.org::::EMD-1731::::</details>
    </map>
</emd>