REL PDBe PDBe PDBe 2010-05-11 2010-06-11 2010-06-21 2016-04-13 4.6 Angstrom Cryo-EM reconstruction of Tobacco Mosaic Virus from images recorded at 300 KeV on a 4kx4k CCD camera Clare DK Orlova EV Cryo-EM, single particle processing, TMV, CCD data, 300 KeV electrons Clare DK Orlova EV 4.6A Cryo-EM reconstruction of tobacco mosaic virus from images recorded at 300 keV on a 4k x 4k CCD camera. J.STRUCT.BIOL. 171 303 308 2010 20558300 doi:10.1016/j.jsb.2010.06.011 2xea FULLOVERLAP Tobacco Mosaic Virus Tobacco Mosaic Virus
Monodisperse
Homo-oligomer of TMV coat protein and ssRNA 2 0.175 0.175 Tobacco mosaic virus Tobacco mosaic virus Nicotiana PLANTAE(HIGHER PLANTS) 0.175 0.175 CP 180 VIRION OTHER false false TMV ssRNA Tobacco mosaic virus TMV OTHER SINGLE STRANDED false helical filament 3 7.4
50 mM Tris-HCl, 50 mM KCl, 10 mM MgCl2
 NEGATIVE
3.5ul of TMV was added to R2/2 C-flat grid, blotted, then plunge frozen in liquid ethane
400 mesh R2/2 c-flat grids
 ETHANE 60 100 HOMEMADE PLUNGER
Vitrification instrument: Home made plunger
Grids were blotted for around 2 seconds and then rapidly plunged into liquid ethane FEI POLARA 300 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.3 0.9 3.0 90000.0 121000.0 GATAN HELIUM 78 Corrected at 115,000 times 2009-02-01 GATAN ULTRASCAN 4000 (4k x 4k) 15 104 25 16. Eucentric
The particle were selected using the helical option in boxer
1.408 22.04 C1 OTHER 4.6 FSC 0.5 CUT-OFF SPIDER, IMAGIC
BPRP was used for reconstruction
Each particle was fully CTF corrected
80-100 in theta and 0-22.04 in phi in 0.5 steps
 emd_1730.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 200 200 200 -100 -100 -100 200 200 200 248 248 248 90 90 90 Y X Z -26.271799999999999 46.868499999999997 0.551206 5.7358 1.24 1.24 1.24 6.1 AUTHOR B-factor scaled fully CTF corrected density map of TMV
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 2OM3 RIGID BODY FIT Chimera and Coot
Protocol: Rigid body, real space. The PDB was initially fitted using chimera, the coordinates were then refined using Coot
Cross-correlation coefficient REAL