2025-02-26 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY citation citation_author em_admin _citation.country _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _citation_author.identifier_ORCID _citation_author.name _em_admin.last_update PDBe PDBe 2023-04-17 2024-10-30 2024-10-30 2025-02-26 European Research Council (ERC) 760067 European Union German Research Foundation (DFG) Germany free 50S with additional S4-LSU in native untreated Mycoplasma pneumoniae cells Xue L Mahamid J In situ, Ribosome heterogeneity, S4, cryo-ET, RIBOSOME Xue L Spahn CMT Schacherl M Mahamid J Structural insights into context-dependent inhibitory mechanisms of chloramphenicol in cells. Nat.Struct.Mol.Biol. US 32 257 267 2025 39668257 doi:10.1038/s41594-024-01441-0 1545-9985 Xue L Lenz S Zimmermann-Kogadeeva M Tegunov D Cramer P Bork P Rappsilber J Mahamid J Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature UK 610 205 211 2022 36171285 doi:10.1038/s41586-022-05255-2 1476-4687 0006 NATUAS EMD-13285 other EM volume
EMD-13285 and -13286 are the free 50S classes before focused classification to classify this free 50S with additional S4-LSU protein
 EMD-13286 other EM volume Native untreated Mycoplasma pneumoniae M129 cells Native untreated Mycoplasma pneumoniae M129 cells 0
cryo-electron tomograms of untreated Mycoplasma pneumoniae cells growing in the fast-growing phase
Mycoplasmoides pneumoniae M129 subtomogramAveraging cell 7.4
The modified Hayflick medium: 14.7g/L Difco PPLO(Becton Dickinson), 20% (v/v) Gibco horse serum(New Zealand origin), 100 mM HEPES-Na; pH 7.4, 1% (w/w) glucose, 0.002% (w/w) phenol red, 1000 U/mL penicillin G.
 Quantifoil R2/1 GOLD 200 CARBON HOLEY GLOW DISCHARGE ETHANE-PROPANE
Back-side blotting for 2-3 second before plunging using a manual plunger without an environmental chamber..
Mycoplasma pneumoniae M129 cells grown on gold Quantifoil grids at 37 degrees Celsius before plunge freezing.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.5 3.75 81000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Bioquantum 20 GATAN K2 SUMMIT (4k x 4k) COUNTING 3.2 1 C1 7.9 FSC 0.143 CUT-OFF RELION 3.0.7 5791 356 24157 PyTom 0.9.7.1 Warp 1.0.7 5 RELION 3.0.7
3D classification in RELION using a spherical mask focusing on the extra S4 on the large ribosomal subunit. Multiple jobs were performed.
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