2023-12-13 REL PDBe PDBe PDBe 2023-04-07 2023-08-02 2023-08-02 2023-12-13 Netherlands Organisation for Scientific Research (NWO) VI.Veni.202.271 Netherlands Chinese Scholarship Council 2014-03250042 China Human Coronavirus HKU1 W89A spike glycoprotein incubated with an alpha2,8-linked 9-O-acetylated disialoside (closed state) Drulyte I Hurdiss DL Virus, Coronavirus, HKU1, Spike, Glycoprotein, Membrane fusion, viral protein Pronker MF Creutznacher R Drulyte I Hulswit RJG Li Z van Kuppeveld FJM Snijder J Lang Y Bosch BJ Boons GJ Frank M de Groot RJ Hurdiss DL Sialoglycan binding triggers spike opening in a human coronavirus. Nature UK 624 201 206 2023 37794193 doi:10.1038/s41586-023-06599-z 1476-4687 0006 NATUAS Trimeric spike glycoprotein Trimeric spike glycoprotein 0 1 Human coronavirus HKU1 Caen1 membrane 0.44 Spike glycoprotein Human coronavirus HKU1 Caen1 Homo sapiens LEVO MPMGSLQPLATLYLLGMLVASVLAVIGDFNCTNFAINDLNTTIPRISEYVVDVSYGLGTYYILDRVYLNTTILFTGYFPKSGANFRDLSLKGTTKLSTLAYQKPFLSDFNNGIFSRVKNTKLYVNKTLYSEFSTIVIGSVFINNSYTIVVQPHNGVLEITACQYTMCEYPHTICKSIGSSRNESWHFDKSEPLCLFKKNFTYNVSTDWLYFHFYQERGTFYAYYADSGMPTTFLFSLYLGTLLSHYYVLPLTCNAISSNTDNETLQYWVTPLSKRQYLLKFDDRGVITNAVDCSSSFFSEIQCKTKSLLPNTGVYDLSGFTVKPVATVHRRIPDLPDCDIDKWLNNFNVPSPLNWERKIFSNCNFNLSTLLRLVHTDSFSCNNFDESKIYGSCFKSIVLDKFAIPNSRRSDLQLGSSGFLQSSNYKIDTTSSSCQLYYSLPAINVTINNYNPSSWNRRYGFNNFNLSSHSVVYSRYCFSVNNTFCPCAKPSFASSCKSHKPPSASCPIGTNYRSCESTTVLDHTDWCRCSCLPDPITAYDPRSCSQKKSLVGVGEHCAGFGVDEEKCGVLDGSYNVSCLCSTDAFLGWSYDTCVSNNRCNIFSNFILNGINSGTTCSNDLLQPNTEVFTDVCVDYDLYGITGQGIFKEVSAVYYNSWQNLLYDFNGNIIGFKDFVTNKTYNIFPCYAGRVSAAFHQNASSLALLYRNLKCSYVLNNISLATQPYFDSYLGCVFNADNLTDYSVSSCALRMGSGFCVDYNSPSSSSSGGSGSSISASYRFVTFEPFNVSFVNDSIESVGGLYEIKIPTNFTIVGQEEFIQTNSPKVTIDCSLFVCSNYAACHDLLSEYGTFCDNINSILDEVNGLLDTTQLHVADTLMQGVTLSSNLNTNLHFDVDNINFKSLVGCLGPHCGSSSRSFFEDLLFDKVKLSDVGFVEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILSESQISGYTTAATVAAMFPPWSAAAGIPFSLNVQYRINGLGVTMDVLNKNQKLIATAFNNALLSIQNGFSATNSALAKIQSVVNSNAQALNSLLQQLFNKFGAISSSLQEILSRLDALEAQVQIDRLINGRLTALNAYVSQQLSDISLVKLGAALAMEKVNECVKSQSPRINFCGNGNHILSLVQNAPYGLLFMHFSYKPISFKTVLVSPGLCISGDVGIAPKQGYFIKHNDHWMFTGSSYYYPEPISDKNVVFMNTCSVNFTKAPLVYLNHSVPKLSDFESELSHWFKNQTSIAPNLTLNLHTINATFLDLLIKRMKQIEDKIEEIESKQKKIENEIARIKKIKLVPRGSLEWSHPQFEK E0YJ44 singleParticle particle 1.3 8.0 150.0 NaCl sodium chloride 20.0 Tris-HCl 1.0 EDTA 2.5 D-biotin Quantifoil R1.2/1.3 COPPER 200 GLOW DISCHARGE ETHANE 95 277 FEI VITROBOT MARK IV
Concentration of protein (N-linked glycans not included due to glycan heterogeneity).
 TFS GLACIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 50.0 2.7 1.5 2.5 150000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 20 FEI FALCON IV (4k x 4k) 4096 4096 1 896 5.85 41.7 1 215843
Ab initio
 C3 5.1 FSC 0.143 CUT-OFF cryoSPARC 4.1 20452 MAXIMUM LIKELIHOOD cryoSPARC 4.1
Ab initio
 MAXIMUM LIKELIHOOD cryoSPARC 4.1 emd_17079.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 368.00998 368.00998 368.00998 90.0 90.0 90.0 X Y Z -0.0009006262 1.7115015 0.002110897 0.030320866 1.2267 1.2267 1.2267 0.105 AUTHOR DeepEMhancer sharpened map emd_17079_msk_1.map emd_17079_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 368.00998 368.00998 368.00998 90.0 90.0 90.0 X Y Z -0.29929975 1.8111774 0.0005013542 0.09429221 1.2267 1.2267 1.2267 AUTHOR Unsharpened map emd_17079_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 368.00998 368.00998 368.00998 90.0 90.0 90.0 X Y Z -1.2449341 3.4253967 0.0005013544 0.12175024 1.2267 1.2267 1.2267 AUTHOR Sharpened map emd_17079_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 368.00998 368.00998 368.00998 90.0 90.0 90.0 X Y Z -0.5393927 2.0466259 0.005208233 0.10936698 1.2267 1.2267 1.2267 AUTHOR Half map B emd_17079_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 368.00998 368.00998 368.00998 90.0 90.0 90.0 X Y Z -0.5049836 2.0024128 0.005123009 0.10944007 1.2267 1.2267 1.2267 AUTHOR Half map A