2023-06-07 REL PDBe PDBe PDBe 2023-03-19 2023-04-05 2023-04-05 2023-06-07 Medical Research Council (MRC, United Kingdom) MC_UP_1201/8 United Kingdom Medical Research Council (MRC, United Kingdom) MC_UP_1201/10 United Kingdom Natural Sciences and Engineering Research Council (NSERC, Canada) Canada Swiss National Science Foundation 185544 Switzerland Swiss National Science Foundation 201158 Switzerland Swiss National Science Foundation 194807 Switzerland European Research Council (ERC) 803952 European Union Subtomogram average of bridges of the yeast ER-mitochondria encounter structure (ERMES) Wozny MR Di Luca A Morado DR Picco A Khaddaj R Campomanes P Ivanovic L Hoffmann PC Miller EA Vanni S Kukulski W ERMES, lipid transfer protein, membrane contact sites, SMP domains, LIPID TRANSPORT Wozny MR Di Luca A Morado DR Picco A Khaddaj R Campomanes P Ivanovic L Hoffmann PC Miller EA Vanni S Kukulski W In situ architecture of the ER-mitochondria encounter structure. Nature UK 618 188 192 2023 37165187 doi:10.1038/s41586-023-06050-3 1476-4687 0006 NATUAS EMD-15355 other EM volume EMD-16873 associated EM volume EMD-16871 other EM volume EMD-16872 other EM volume Budding yeast cells expressing Mdm34-mNeonGreen, a component of the ER-mitochondria encounter structure (ERMES). Budding yeast cells expressing Mdm34-mNeonGreen, a component of the ER-mitochondria encounter structure (ERMES). 0
Yeast cells were cryo-FIB-milled, imaged by cryo-FM and electron cryo-tomograms were acquired at localisations of Mdm34-mNeonGreen fluorescent signals.
Saccharomyces cerevisiae S288C subtomogramAveraging cell 6.0
Synthetic complete medium without tryptophan, with 2% glucose and 15% dextran
 Quantifoil R2/2 COPPER 200 CARBON HOLEY GLOW DISCHARGE ETHANE HOMEMADE PLUNGER
Plunge-frozen grids with yeast cells were subjected to cryo-FIB milling followed by cryo-fluorescence microscopy and cryo-ET.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 3.5 6.0 GATAN K3 BIOQUANTUM (6k x 4k) 1.3 1 29.0 FSC 0.143 CUT-OFF 1098 51 1133 OTHER emd_16873.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 644.16003 644.16003 644.16003 90.0 90.0 90.0 X Y Z -0.47138384 0.91799116 0.00020598166 0.058325052 5.3680005 5.3680005 5.3680005 0.142 AUTHOR Subtomogram average map of ERMES bridges, imaged in yeast cells. emd_16873_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 644.16003 644.16003 644.16003 90.0 90.0 90.0 X Y Z -0.47069278 0.5989397 0.00019393464 0.055868797 5.3680005 5.3680005 5.3680005 AUTHOR Subtomogram average map of ERMES bridges aligned on the ER membrane, for determination of the angle between the bridge and the ER normal. emd_16873_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 644.16003 644.16003 644.16003 90.0 90.0 90.0 X Y Z -0.44746393 0.5856428 0.0002628112 0.056688942 5.3680005 5.3680005 5.3680005 AUTHOR Subtomogram average map of ERMES bridges aligned on the outer mitochondrial membrane, for determination of the angle between the bridge and the outer mitochondrial membrane normal. emd_16873_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 644.16003 644.16003 644.16003 90.0 90.0 90.0 X Y Z -0.3387691 1.0208992 0.00023052536 0.011427827 5.3680005 5.3680005 5.3680005 AUTHOR Half map b, masked. Together with masked half map a, this was used for resolution estimate. emd_16873_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 644.16003 644.16003 644.16003 90.0 90.0 90.0 X Y Z -0.3203157 0.84255993 0.00020824894 0.010999652 5.3680005 5.3680005 5.3680005 AUTHOR Half map a, masked. Together with masked half map b, this was used for resolution estimate. emd_16873_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 644.16003 644.16003 644.16003 90.0 90.0 90.0 X Y Z -0.58703786 1.0208992 0.00012831671 0.08265489 5.3680005 5.3680005 5.3680005 AUTHOR Half map b, unmasked emd_16873_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 644.16003 644.16003 644.16003 90.0 90.0 90.0 X Y Z -0.5091173 0.8465851 0.00028417556 0.07918555 5.3680005 5.3680005 5.3680005 AUTHOR Half map a, unmasked.