2023-06-07 REL PDBe PDBe PDBe 2023-03-19 2023-04-05 2023-04-05 2023-06-07 Medical Research Council (MRC, United Kingdom) MC_UP_1201/8 United Kingdom Medical Research Council (MRC, United Kingdom) MC_UP_1201/10 United Kingdom Natural Sciences and Engineering Research Council (NSERC, Canada) Canada Swiss National Science Foundation 185544 Switzerland Swiss National Science Foundation 201158 Switzerland Swiss National Science Foundation 194807 Switzerland European Research Council (ERC) 803952 European Union Subtomogram average of long bridges of the yeast ER-mitochondria encounter structure (ERMES). The population half containing longer bridge structures was averaged. Wozny MR Di Luca A Morado DR Picco A Khaddaj R Campomanes P Ivanovic L Hoffmann PC Miller EA Vanni S Kukulski W ERMES, lipid transfer protein, membrane contact sites, SMP domains, LIPID TRANSPORT Wozny MR Di Luca A Morado DR Picco A Khaddaj R Campomanes P Ivanovic L Hoffmann PC Miller EA Vanni S Kukulski W In situ architecture of the ER-mitochondria encounter structure. Nature UK 618 188 192 2023 37165187 doi:10.1038/s41586-023-06050-3 1476-4687 0006 NATUAS EMD-15355 other EM volume EMD-16872 associated EM volume EMD-16871 other EM volume EMD-16873 other EM volume Budding yeast cells expressing Mdm34-mNeonGreen, a component of the ER-mitochondria encounter structure (ERMES). Budding yeast cells expressing Mdm34-mNeonGreen, a component of the ER-mitochondria encounter structure (ERMES). 0
Yeast cells were cryo-FIB-milled, imaged by cryo-FM and electron cryo-tomograms were acquired at localisations of Mdm34-mNeonGreen fluorescent signals.
Saccharomyces cerevisiae S288C subtomogramAveraging cell 6.0
Synthetic complete medium without tryptophan, with 2% glucose and 15% dextran
 Quantifoil R2/2 COPPER 200 CARBON HOLEY GLOW DISCHARGE ETHANE HOMEMADE PLUNGER
Plunge-frozen grids with yeast cells were subjected to cryo-FIB milling followed by cryo-fluorescence microscopy prior to cryo-ET.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 3.5 6.0 GATAN K3 BIOQUANTUM (6k x 4k) 1.3 1 29.0 FSC 0.143 CUT-OFF
This STA map was obtained by using half of the subtomograms that were used to obtain the map of all ERMES bridges (1098 subtomograms). The data set was split according to bridge length; here the half containing the longer bridges was used for STA.
549 51 1133 OTHER emd_16872.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 644.16003 644.16003 644.16003 90.0 90.0 90.0 X Y Z -0.6066295 0.838105 0.0003837384 0.08184852 5.3680005 5.3680005 5.3680005 0.2 AUTHOR Subtomogram average (STA) map of long ERMES bridge structures. The data set of all bridges was split into halves according to bridge length. The map has been aligned to the STA map of short bridges. emd_16872_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 644.16003 644.16003 644.16003 90.0 90.0 90.0 X Y Z -0.58462757 0.8703612 0.0001659969 0.08212013 5.3680005 5.3680005 5.3680005 AUTHOR This is the main STA map of long bridges, not aligned to the STA map of short bridges. emd_16872_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 644.16003 644.16003 644.16003 90.0 90.0 90.0 X Y Z -0.38825884 0.93897694 0.0001968946 0.011459229 5.3680005 5.3680005 5.3680005 AUTHOR Half map b, masked. Together with masked half map a, this was used for resolution estimate. emd_16872_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 644.16003 644.16003 644.16003 90.0 90.0 90.0 X Y Z -0.4478985 0.8922074 0.00019165482 0.011612804 5.3680005 5.3680005 5.3680005 AUTHOR Half map a, masked. Together with masked half map b, this was used for resolution estimate. emd_16872_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 644.16003 644.16003 644.16003 90.0 90.0 90.0 X Y Z -0.7542845 0.89566714 0.0002729852 0.11496997 5.3680005 5.3680005 5.3680005 AUTHOR Half map a, unmasked emd_16872_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 644.16003 644.16003 644.16003 90.0 90.0 90.0 X Y Z -0.6619196 1.0240746 0.00006629223 0.11515838 5.3680005 5.3680005 5.3680005 AUTHOR Half map b, unmasked