2025-01-22 REL PDBe PDBe PDBe 2023-03-03 2024-03-13 2024-03-13 2025-01-22 Max Planck Society Germany Photorhabdus luminescens TcdA1 prepore-to-pore intermediate, K567W K2008W mutant Nganga PN Roderer D Belyy A Prumbaum D Raunser S Bacterial toxin, Tc toxin, TOXIN Ng'ang'a PN Folz J Kucher S Roderer D Xu Y Sitsel O Belyy A Prumbaum D Kuhnemuth R Assafa TE Dong M Seidel CAM Bordignon E Raunser S Multistate kinetics of the syringe-like injection mechanism of Tc toxins. Sci Adv US 11 eadr2019 eadr2019 2025 39752508 doi:10.1126/sciadv.adr2019 2375-2548 8cq0 FULLOVERLAP TcdA1 TcdA1 0 1 Photorhabdus luminescens 1.5 TcdA1 Photorhabdus luminescens 0.285489844 5 Escherichia coli LEVO MAHHHHHHSSGLEVLFQGPMNESVKEIPDVLKSQCGFNCLTDISHSSFNEFRQQVSEHLSWSETHDLYHDAQQAQKDNRL YEARILKRANPQLQNAVHLAILAPNAELIGYNNQFSGRASQYVAPGTVSSMFSPAAYLTELYREARNLHASDSVYYLDTR RPDLKSMALSQQNMDIELSTLSLSNELLLESIKTESKLENYTKVMEMLSTFRPSGATPYHDAYENVREVIQLQDPGLEQL NASPAIAGLMHQASLLGINASISPELFNILTEEITEGNAEELYKKNFGNIEPASLAMPEYLKRYYNLSDEELSQFIGKAS NFGQQEYSNNQLITPVVNSSDGTVKVYRITREYTTNAYQMDVELFPFGGENYRLDYKFKNFYNASYLSIKLNDKRELVRT EGAPQVNIEYSANITLNTADISQPFEIGLTRVLPSGSWAYAAAKFTVEEYNQYSFLLKLNKAIRLSRATELSPTILEGIV RSVNLQLDINTDVLGKVFLTKYYMQRYAIHAETALILCNAPISQRSYDNQPSQFDRLFNTPLLNGQYFSTGDEEIDLNSG STGDWRKTILKRAFNIDDVSLFRLLWITDHDNKDGKIKNNLKNLSNLYIGKLLADIHQLTIDELDLLLIAVGEGKTNLSA ISDKQLATLIRKLNTITSWLHTQKWSVFQLFIMTSTSYNKTLTPEIKNLLDTVYHGLQGFDKDKADLLHVMAPYIAATLQ LSSENVAHSVLLWADKLQPGDGAMTAEKFWDWLNTKYTPGSSEAVETQEHIVQYCQALAQLEMVYHSTGINENAFRLFVT KPEMFGAATGAAPAHDALSLIMLTRFADWVNALGEKASSVLAAFEANSLTAEQLADAMNLDANLLLQASIQAQNHQHLPP VTPENAFSCWTSINTILQWVNVAQQLNVAPQGVSALVGLDYIQSMKETPTYAQWENAAGVLTAGLNSQQANTLHAFLDES RSAALSTYYIRQVAKAAAAIKSRDDLYQYLLIDNQVSAAIKTTRIAEAIASIQLYVNRALENVEENANSGVISRQFFIDW DKYNKRYSTWAGVSQLVYYPENYIDPTMRIGQTKMMDALLQSVSQSQLNADTVEDAFMSYLTSFEQVANLKVISAYHDNI NNDQGLTYFIGLSETDAGEYYWRSVDHSKFNDGKFAANAWSEWHKIDCPINPYKSTIRPVIYKSRLYLLWLEQKEITKQT GNSKDGYQTETDYRYELKLAHIRYDGTWNTPITFDVNKKISELKLEKNRAPGLYCAGYQGEDTLLVMFYNQQDTLDSYKN ASMQGLYIFADMASKDMTPEQSNVYRDNSYQQFDTNNVRRVNNRYAEDYEIPSSVSSRKDYGWGDYYLSMVYNGDIPTIN YKAASSDLKIYISPKLRIIHNGYEGQKRNQCNLMNKYGKLGDKFIVYTSLGVNPNNSSNKLMFYPVYQYSGNTSGLNQGR LLFHRDTTYPSKVEAWIPGAKRSLTNQNAAIGDDYATDSLNKPDDLKQYIFMTDSKGTATDVSGPVEINTAISPAKVQII VKAGGKEQTFTADKDVSIQPSPSFDEMNYQFNALEIDGSGLNFINNSASIDVTFTAFAEDGRKLGYESFSIPVTLKVSTD NALTLHHNENGAQYMQWQSYRTRLNTLFARQLVARATTGIDTILSMETQNIQEPQLGKGFYATFVIPPYNLSTHGDERWF KLYIKHVVDNNSHIIYSGQLTDTNINITLFIPLDDVPLNQDYHAKVYMTFKKSPSDGTWWGPHFVRDDKGIVTINPKSIL THFESVNVLNNISSEPMDFSGANSLYFWELFYYTPMLVAQRLLHEQNFDEANRWLKYVWSPSGYIVHGQIQNYQWNVRPL LEDTSWNSDPLDSVDPDAVAQHDPMHYKVSTFMRTLDLLIARGDHAYRQLERDTLNEAKMWYMQALHLLGDKPYLPLSTT WSDPRLDRAADITTQNAHDSAIVALRQNIPTPAPLSLRSANTLTDLFLPQINEVMMNYWQTLAQRVYNLRHNLSIDGQPL YLPIYATPADPKALLSAAVATSQGGGWLPESFMSLWRFPHMLENARGMVSQLTQFGSTLQNIIERQDAEALNALLQNQAA ELILTNLSIQDKTIEELDAEKTVLEKSKAGAQSRFDSYGKLYDENINAGENQAMTLRASAAGLTTAVQASRLAGAAADLV PNIFGFAGGGSRWGAIAEATGYVMEFSANVMNTEADKISQSETYRRRRQEWEIQRNNAEAELKQIDAQLKSLAVRREAAV LQKTSLKTQQEQTQSQLAFLQRKFSNQALYNWLRGRLAAIYFQFYDLAVARCLMAEQAYRWELNDDSARFIKPGAWQGTY AGLLAGETLMLSLAQMEDAHLKRDKRALEVERTVSLAEVYAGLPKDNGPFSLAQEIDKLVSQGSGSAGSGNNNLAFGAGT DTKTSLQASVSFADLKIREDYPASLGKIRRIKQISVTLPALLGPYQDVQAILSYGDKAGLANGCEALAVSHGMNDSGQFQ LDFNDGKFLPFEGIAIDQGTLTLSFPNASMPEKGKQATMLKTLNDIILHIRYTIK Q9RN43 singleParticle particle 11.199999999999999 100.0 C9H19NO3S CAPS 150.0 NaCl Sodium Chloride 0.1 Tween-20 Quantifoil R2/1 COPPER 300 CARBON CONTINUOUS 2.0 GLOW DISCHARGE ETHANE 100 286 FEI VITROBOT MARK IV FEI TITAN KRIOS SPOT SCAN BRIGHT FIELD FIELD EMISSION GUN 300 1.5 3.0 81000.0 NITROGEN GATAN K3 (6k x 4k) INTEGRATING 2 24611 57.0 1 936131 6RW6 C5 FOURIER SPACE 3.2 FSC 0.143 CUT-OFF RELION 13356 MAXIMUM LIKELIHOOD SPHIRE MAXIMUM LIKELIHOOD RELION RELION emd_16792.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 560 560 560 0 0 0 560 560 560 492.8 492.8 492.8 90.0 90.0 90.0 X Y Z -0.051121328 0.12087269 0.00024732033 0.0029014912 0.88 0.88 0.88 0.015 AUTHOR The local filtered map that was used for model building FLEXIBLE FIT REAL emd_16792_msk_1.map emd_16792_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 560 560 560 0 0 0 560 560 560 492.8 492.8 492.8 90.0 90.0 90.0 X Y Z -0.02955457 0.05284908 0.000024697882 0.0029540292 0.88 0.88 0.88 AUTHOR First half map emd_16792_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 560 560 560 0 0 0 560 560 560 492.8 492.8 492.8 90.0 90.0 90.0 X Y Z -0.02899015 0.048209388 0.000068245594 0.0029307292 0.88 0.88 0.88 AUTHOR Second half map