2023-10-11 REL PDBe PDBe PDBe 2023-01-18 2023-10-11 2023-10-11 2023-10-11 German Research Foundation (DFG) SFB944 Germany German Research Foundation (DFG) SFB15 Germany Cryo-EM structure of the yeast SPT-Orm1-Sac1 complex Schaefer J Koerner C Parey K Januliene D Moeller A Froehlich F Serine-Palmitoyl-Transferase, SPT, Orm-Protein, TRANSFERASE Schafer JH Korner C Esch BM Limar S Parey K Walter S Januliene D Moeller A Frohlich F Structure of the ceramide-bound SPOTS complex. Nat Commun UK 14 6196 6196 2023 37794019 doi:10.1038/s41467-023-41747-z 2041-1723 8c81 FULLOVERLAP Heteropentameric complex of Orm1 with Lcb1, Lcb2, Tsc3 and Sac1 Heteropentameric complex of Orm1 with Lcb1, Lcb2, Tsc3 and Sac1 0 1 2 3 4 5 Saccharomyces cerevisiae 0.23 Protein ORM1 Saccharomyces cerevisiae 0.025221674 1 Saccharomyces cerevisiae LEVO MTELDYQGTAEAASTSYSRNQTDLKPFPSAGSASSSIKTTEPVKDHRRRRAAAIISHVEPETFEDENDQQLLPNMNATWV DQRGAWIIHVVIIILLKLFYNLFPGVTTEWSWTLTNMTYVIGSYVMFHLIKGTPFDFNGGAYDNLTMWEQIDDETLYTPS RKFLISVPIALFLVSTHYAHYDLKLFSWNCFLTTFGAVVPKLPVTHRLRISIPGITGRAQIS P53224 Serine palmitoyltransferase 1 Saccharomyces cerevisiae 0.06498551999999999 1 Saccharomyces cerevisiae LEVO MAHIPEVLPDYKDHDGDYKDHDIDYKDDDDKKSIPIPAFIVTTSSYLWYYFNLVLTQIPGGQFIVSYIKKSHHDDPYRTT VEIGLILYGIIYYLSKPQQKKSLQAQKPNLSPQEIDALIEDWEPEPLVDPSATDEQSWRVAKTPVTMEMPIQNHITITRN NLQEKYTNVFNLASNNFLQLSATEPVKEVVKTTIKNYGVGACGPAGFYGNQDVHYTLEYDLAQFFGTQGSVLYGQDFCAA PSVLPAFTKRGDVIVADDQVSLPVQNALQLSRSTVYYFNHNDMNSLECLLNELTEQEKLEKLPAIPRKFIVTEGIFHNSG DLAPLPELTKLKNKYKFRLFVDETFSIGVLGATGRGLSEHFNMDRATAIDITVGSMATALGSTGGFVLGDSVMCLHQRIG SNAYCFSACLPAYTVTSVSKVLKLMDSNNDAVQTLQKLSKSLHDSFASDDSLRSYVIVTSSPVSAVLHLQLTPAYRSRKF GYTCEQLFETMSALQKKSQTNKFIEPYEEEEKFLQSIVDHALINYNVLITRNTIVLKQETLPIVPSLKICCNAAMSPEEL KNACESVKQSILACCQESNK P25045 2.3.1.50 Serine palmitoyltransferase 2 Saccharomyces cerevisiae 0.063189707 1 Saccharomyces cerevisiae LEVO MSTPANYTRVPLCEPEELPDDIQKENEYGTLDSPGHLYQVKSRHGKPLPEPVVDTPPYYISLLTYLNYLILIILGHVHDF LGMTFQKNKHLDLLEHDGLAPWFSNFESFYVRRIKMRIDDCFSRPTTGVPGRFIRCIDRISHNINEYFTYSGAVYPCMNL SSYNYLGFAQSKGQCTDAALESVDKYSIQSGGPRAQIGTTDLHIKAEKLVARFIGKEDALVFSMGYGTNANLFNAFLDKK CLVISDELNHTSIRTGVRLSGAAVRTFKHGDMVGLEKLIREQIVLGQPKTNRPWKKILICAEGLFSMEGTLCNLPKLVEL KKKYKCYLFIDEAHSIGAMGPTGRGVCEIFGVDPKDVDILMGTFTKSFGAAGGYIAADQWIIDRLRLDLTTVSYSESMPA PVLAQTISSLQTISGEICPGQGTERLQRIAFNSRYLRLALQRLGFIVYGVADSPVIPLLLYCPSKMPAFSRMMLQRRIAV VVVAYPATPLIESRVRFCMSASLTKEDIDYLLRHVSEVGDKLNLKSNSGKSSYDGKRQRWDIEEVIRRTPEDCKDDKYFV N P40970 2.3.1.50 Serine palmitoyltransferase-regulating protein TSC3 Saccharomyces cerevisiae 0.009590233 1 Saccharomyces cerevisiae LEVO MTQHKSSMVYIPTTKEAKRRNGKSEGILNTIEEVVEKLYWTYYIHLPFYLMASFDSFFLHVFFLTIFSLSFFGILKYCFL Q3E790 Phosphatidylinositol-3-phosphatase SAC1 Saccharomyces cerevisiae 0.071214352 1 Saccharomyces cerevisiae LEVO MTGPIVYVQNADGIFFKLAEGKGTNDAVIHLANQDQGVRVLGAEEFPVQGEVVKIASLMGFIKLKLNRYAIIANTVEETG RFNGHVFYRVLQHSIVSTKFNSRIDSEEAEYIKLLELHLKNSTFYFSYTYDLTNSLQRNEKVGPAASWKTADERFFWNHY LTEDLRNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIFRAGTRYFRRGVDKDGNVGNFNETEQILLAE NPESEKIHVFSFLQTRGSVPIYWAEINNLKYKPNLVLGENSLDATKKHFDQQKELYGDNYLVNLVNQKGHELPVKEGYES VVHALNDPKIHYVYFDFHHECRKMQWHRVKLLIDHLEKLGLSNEDFFHKVIDSNGNTVEIVNEQHSVVRTNCMDCLDRTN VVQSVLAQWVLQKEFESADVVATGSTWEDNAPLLTSYQNLWADNADAVSVAYSGTGALKTDFTRTGKRTRLGAFNDFLNS ASRYYQNNWTDGPRQDSYDLFLGGFRPHTASIKSPFPDRRPVYIQLIPMIICAALTVLGATIFFPKDRFTSSKNLLYFAG ASIVLALSTKFMFKNGIQFVNWPKLVDVGFLVVHQTHDKEQQFKGLKYAQSPKFSKPDPLKRD P32368 3.1.3.64 ERGOSTEROL 0.000396648 3 ERG N-[(2S,3S,4R)-1,3,4-trihydroxyoctadecan-2-yl]hexacosanamide 0.0006961819999999999 1 Z8A 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside 0.001165315 1 Q7G PYRIDOXAL-5'-PHOSPHATE 0.000247142 1 PLP singleParticle particle 10.0 6.8 ETHANE 100 277.15 FEI VITROBOT MARK IV TFS GLACIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 0.8 2.0 130000.0 TFS Selectris 10 FEI FALCON IV (4k x 4k) 13604 50.0 1 C1 3.3 FSC 0.143 CUT-OFF 53236 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_16468.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 432 432 432 0 0 0 432 432 432 399.168 399.168 399.168 90.0 90.0 90.0 X Y Z -0.63460416 1.0689365 -0.000072497685 0.026991246 0.924 0.924 0.924 0.14 AUTHOR SPOTS-Orm1-Sac1-Map AB INITIO MODEL REAL 63.0 emd_16468_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 432 432 432 0 0 0 432 432 432 399.168 399.168 399.168 90.0 90.0 90.0 X Y Z -1.3216918 1.4056422 0.00047135094 0.16737169 0.924 0.924 0.924 AUTHOR SPOTS-Orm1-Sac1-Half-Map-B emd_16468_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 432 432 432 0 0 0 432 432 432 399.168 399.168 399.168 90.0 90.0 90.0 X Y Z -1.3796537 1.4586246 0.00047494745 0.16753104 0.924 0.924 0.924 AUTHOR SPOTS-Orm1-Sac1-Half-Map-A