2024-02-21 REL PDBe PDBe PDBe 2023-01-12 2024-01-10 2024-01-10 2024-02-21 Other private Generalitat de Catalunya Spain SARS-CoV-2 Omicron Variant Spike Trimer in complex with three 17T2 Fabs Modrego A Carlero D Bueno-Carrasco MT Santiago C Carolis C Arranz R Blanco J Magri G Complex SARS-CoV-2 Spike S 17T2, VIRAL PROTEIN de Campos-Mata L Trinite B Modrego A Tejedor Vaquero S Pradenas E Pons-Grifols A Rodrigo Melero N Carlero D Marfil S Santiago C Raich-Regue D Bueno-Carrasco MT Tarres-Freixas F Abanco F Urrea V Izquierdo-Useros N Riveira-Munoz E Ballana E Perez M Vergara-Alert J Segales J Carolis C Arranz R Blanco J Magri G A monoclonal antibody targeting a large surface of the receptor binding motif shows pan-neutralizing SARS-CoV-2 activity. Nat Commun UK 15 1051 1051 2024 38316751 doi:10.1038/s41467-024-45171-9 2041-1723 SARS-CoV-2 Omicron Variant Spike Trimer in complex with three 17T2 Fabs SARS-CoV-2 Omicron Variant Spike Trimer in complex with three 17T2 Fabs 0 1 2 3 Spike glycoprotein 1 1 Severe acute respiratory syndrome coronavirus 17T2 Fab 1 2 3 Homo sapiens Spike glycoprotein Severe acute respiratory syndrome coronavirus LEVO MPRGPVAALLLLILHGAWSCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHVISGTNGTKRFDNPVLPFNDGVYFASIEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIIVREPEDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLKGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEYVNNSYECDIPIGAGICASYQTQTKSHGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFKGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDIFSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQLVPRGSGYIPEAPRDGQAYVRKDGEWVLLSTFLHHHHHH 17T2 Fab heavy chain Homo sapiens LEVO QVQLVQSGPEVKKPGTSVKVSCKAPVFTFSISAVQWVRQARGQRLEWIGWIVVGSGNTNYAQNFQERVTITTDMSTGTVYMELSGLRSEDTAMYYCAAPYCNRTTCYDGFDLWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK 17T2 Fab light chain Homo sapiens LEVO EIVLTQSPGTLSLSPGERATLSCRASQSISSNYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLSINRLEPEDFAMYYCQHYGGLSRWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC singleParticle particle 7.6 ETHANE TFS TALOS F200C OTHER BRIGHT FIELD FIELD EMISSION GUN 200 1.0 2.5 FEI FALCON III (4k x 4k) 32.0 1
Ab initio generation using cryosparc
 3.46 FSC 0.143 CUT-OFF 124570 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_16453.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 492 492 492 0 0 0 492 492 492 420.66 420.66 420.66 90.0 90.0 90.0 X Y Z -0.001696685 1.9730217 0.0012242051 0.023971394 0.855 0.855 0.855 0.034 AUTHOR Structure map obtained after DeepEMhancer post-processing in cryosparc. emd_16453_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 492 492 492 0 0 0 492 492 492 420.66 420.66 420.66 90.0 90.0 90.0 X Y Z -0.6391157 1.950913 0.0008215148 0.06324595 0.855 0.855 0.855 AUTHOR Half map B obtained in the non-uniform refinement in cryosparc. emd_16453_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 492 492 492 0 0 0 492 492 492 420.66 420.66 420.66 90.0 90.0 90.0 X Y Z -0.7118514 1.9225368 0.00088236644 0.06311681 0.855 0.855 0.855 AUTHOR Half map A obtained in the non-uniform refinement in cryosparc.