<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="https://ftp.ebi.ac.uk/pub/databases/em_ebi/emdb_related/emdb-schemas/emdb_schemas/v3/v3_0_9_0/emdb.xsd" version="3.0.9.0" emdb_id="EMD-16432">
    <admin>
        <current_status>
            <date>2023-11-08</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2023-01-06</deposition>
            <header_release>2023-09-20</header_release>
            <map_release>2023-09-20</map_release>
            <update>2023-11-08</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>iNEXT-Discovery</funding_body>
                <code>871037</code>
                <country>European Union</country>
            </grant_reference>
            <grant_reference>
                <funding_body>Agence Nationale de la Recherche (ANR)</funding_body>
                <code>ANR-10-INSB-05</code>
                <country>France</country>
            </grant_reference>
        </grant_support>
        <title>HSF2BP-BRCA2 ring-shaped complex</title>
        <authors_list>
            <author ORCID="0000-0002-7680-1088">Zinn-Justin S</author>
            <author ORCID="0000-0003-1628-0249">Ghouil R</author>
            <author ORCID="0000-0003-0565-9958">Miron S</author>
            <author ORCID="0000-0003-2431-2255">Legrand P</author>
            <author ORCID="0000-0002-7601-6397">Ouldali M</author>
            <author>Winter JM</author>
            <author ORCID="0000-0002-3372-6030">Ropars V</author>
            <author ORCID="0000-0001-6462-905X">Arteni AA</author>
        </authors_list>
        <keywords>Meiosis, Cancer Antigen, DNA repair, Fertility, Armadillo domain, Intrinsically Disordered Protein, RECOMBINATION</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author ORCID="0000-0003-1628-0249" order="1">Ghouil R</author>
                    <author ORCID="0000-0003-0565-9958" order="2">Miron S</author>
                    <author ORCID="0000-0002-0574-774X" order="3">Sato K</author>
                    <author order="4">Ristic D</author>
                    <author order="5">van Rossum-Fikkert SE</author>
                    <author ORCID="0000-0003-2431-2255" order="6">Legrand P</author>
                    <author ORCID="0000-0002-7601-6397" order="7">Ouldali M</author>
                    <author ORCID="0009-0000-1978-1765" order="8">Winter JM</author>
                    <author ORCID="0000-0002-3372-6030" order="9">Ropars V</author>
                    <author order="10">David G</author>
                    <author ORCID="0000-0001-6462-905X" order="11">Arteni AA</author>
                    <author order="12">Wyman C</author>
                    <author ORCID="0000-0003-4198-0132" order="13">Knipscheer P</author>
                    <author ORCID="0000-0001-9364-8727" order="14">Kanaar R</author>
                    <author ORCID="0000-0002-2664-271X" order="15">Zelensky AN</author>
                    <author ORCID="0000-0002-7680-1088" order="16">Zinn-Justin S</author>
                    <title>BRCA2-HSF2BP oligomeric ring disassembly by BRME1 promotes homologous recombination.</title>
                    <journal_abbreviation>Sci Adv</journal_abbreviation>
                    <country>US</country>
                    <volume>9</volume>
                    <first_page>eadi7352</first_page>
                    <last_page>eadi7352</last_page>
                    <year>2023</year>
                    <external_references type="PUBMED">37889963</external_references>
                    <external_references type="DOI">doi:10.1126/sciadv.adi7352</external_references>
                    <external_references type="ISSN">2375-2548</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
    </crossreferences>
    <sample>
        <name>Complex between HSF2BP and the BRCA2 fragment N2291-Q2342</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Complex between HSF2BP and the BRCA2 fragment N2291-Q2342</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <details>The complex contains 24 HSF2BP molecules and 12 BRCA2 peptides</details>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="kDa/nm">900</theoretical>
                </molecular_weight>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>HSF2BP</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <details>Full-length human HSF2BP</details>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MGEAGAAEEACRHMGTKEEFVKVRKKDLERLTTEVMQIRDFLPRILNGEVLESFQKLKIV
EKNLERKEQELEQLKMDCEHFKARLETVQADNIREKKEKLALRQQLNEAKQQLLQQAEYC
TEMGAAACTLLWGVSSSEEVVKAILGGDKALKFFSITGQTMESFVKSLDGDVQELDSDES
QFVFALAGIVTNVAAIACGREFLVNSSRVLLDTILQLLGDLKPGQCTKLKVLMLMSLYNV
SINLKGLKYISESPGFIPLLWWLLSDPDAEVCLHVLRLVQSVVLEPEVFSKSASEFRSSL
PLQRILAMSKSRNPRLQTAAQELLEDLRTLEHNV</string>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name>BRCA2</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <details>BRCA2 from N2291 to Q2342 with a C-terminal TEV site (was produced fused to GB1-6His)</details>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>NEFDRIIENQEKSLKASKSTPDGTIKDRRLFMHHVSLEPITTVPFRTTKERQENLYFQ</string>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">3</concentration>
                    <buffer>
                        <ph>7.5</ph>
                        <component>
                            <concentration units="mM">150.0</concentration>
                            <formula>NaCl</formula>
                            <name>sodium chloride</name>
                        </component>
                        <component>
                            <concentration units="mM">25.0</concentration>
                            <formula>Tris-HCl</formula>
                            <name>Tris buffer</name>
                        </component>
                        <component>
                            <concentration units="mM">5.0</concentration>
                            <formula>beta-mercaptoethanol</formula>
                            <name>reducing agent</name>
                        </component>
                    </buffer>
                    <grid>
                        <model>Quantifoil R2/2</model>
                        <material>GOLD</material>
                        <mesh>300</mesh>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <chamber_temperature units="K">277</chamber_temperature>
                        <instrument>FEI VITROBOT MARK IV</instrument>
                    </vitrification>
                    <details>Obtained after gel filtration on the complex</details>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>OTHER</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <c2_aperture_diameter units="µm">100.0</c2_aperture_diameter>
                    <nominal_cs units="mm">2.7</nominal_cs>
                    <nominal_defocus_min units="µm">0.4</nominal_defocus_min>
                    <nominal_defocus_max units="µm">1.8</nominal_defocus_max>
                    <specialist_optics>
                        <energy_filter>
                            <name>TFS Selectris X</name>
                            <slit_width units="eV">10</slit_width>
                        </energy_filter>
                    </specialist_optics>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>TFS FALCON 4i (4k x 4k)</film_or_detector_model>
                            <number_real_images>9531</number_real_images>
                            <average_electron_dose_per_image units="e/Å^2">40.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <particle_selection>
                    <number_selected>660000</number_selected>
                </particle_selection>
                <startup_model type_of_model="NONE"/>
                <final_reconstruction>
                    <number_classes_used>2</number_classes_used>
                    <applied_symmetry>
                        <point_group>D3</point_group>
                    </applied_symmetry>
                    <resolution units="Å" res_type="BY AUTHOR">3.26</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>cryoSPARC</name>
                            <version>4.1</version>
                        </software>
                    </software_list>
                    <number_images_used>398000</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>NOT APPLICABLE</type>
                    <software_list>
                        <software>
                            <name>cryoSPARC</name>
                        </software>
                    </software_list>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>NOT APPLICABLE</type>
                    <software_list>
                        <software>
                            <name>cryoSPARC</name>
                        </software>
                    </software_list>
                </final_angle_assignment>
                <final_three_d_classification>
                    <number_classes>3</number_classes>
                    <software_list>
                        <software>
                            <name>cryoSPARC</name>
                        </software>
                    </software_list>
                    <details>One of these volumes had the shape of an open ring, the two other volumes were well-resolved rings. The 398 000 particles corresponding to these two volumes were used to calculate the final cryo-EM map of the complex.</details>
                </final_three_d_classification>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="864001">
        <file>emd_16432.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>600</col>
            <row>600</row>
            <sec>600</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>600</x>
            <y>600</y>
            <z>600</z>
        </spacing>
        <cell>
            <a units="Å">438.0</a>
            <b units="Å">438.0</b>
            <c units="Å">438.0</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.09052658</minimum>
            <maximum>0.23730436</maximum>
            <average>-0.000045229586</average>
            <std>0.006442293</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">0.73</x>
            <y units="Å">0.73</y>
            <z units="Å">0.73</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.0272</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-16432::::</label>
    </map>
    <interpretation>
        <half_map_list>
            <half_map format="CCP4" size_kbytes="864001">
                <file>emd_16432_half_map_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>600</col>
                    <row>600</row>
                    <sec>600</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>600</x>
                    <y>600</y>
                    <z>600</z>
                </spacing>
                <cell>
                    <a units="Å">438.0</a>
                    <b units="Å">438.0</b>
                    <c units="Å">438.0</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.13594523</minimum>
                    <maximum>0.28301114</maximum>
                    <average>0.000088968336</average>
                    <std>0.01414638</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">0.73</x>
                    <y units="Å">0.73</y>
                    <z units="Å">0.73</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-16432::::</label>
            </half_map>
            <half_map format="CCP4" size_kbytes="864001">
                <file>emd_16432_half_map_2.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>600</col>
                    <row>600</row>
                    <sec>600</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>600</x>
                    <y>600</y>
                    <z>600</z>
                </spacing>
                <cell>
                    <a units="Å">438.0</a>
                    <b units="Å">438.0</b>
                    <c units="Å">438.0</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.13260274</minimum>
                    <maximum>0.2907985</maximum>
                    <average>0.00009009637</average>
                    <std>0.0140681</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">0.73</x>
                    <y units="Å">0.73</y>
                    <z units="Å">0.73</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-16432::::</label>
            </half_map>
        </half_map_list>
    </interpretation>
</emd>
