2023-10-04 REL PDBe PDBe PDBe 2022-12-19 2023-10-04 2023-10-04 2023-10-04 German Research Foundation (DFG) GA 2519/1-2 Germany German Research Foundation (DFG) ER 178/7-2 Germany German Research Foundation (DFG) INST 211/667-1 Germany German Research Foundation (DFG) SFB 1430/1, A04 Germany Structure of the peroxisomal Pex1/Pex6 ATPase complex bound to a substrate in single seam state Ruettermann M Koci M Lill P Geladas ED Kaschani F Klink BU Erdmann R Gatsogiannis C AAA ATPase, peroxisomes, peroxisome biogenesis, peroxisome biogenesis disorders, Zellweger Syndrome, TRANSLOCASE Ruttermann M Koci M Lill P Geladas ED Kaschani F Klink BU Erdmann R Gatsogiannis C Structure of the peroxisomal Pex1/Pex6 ATPase complex bound to a substrate. Nat Commun UK 14 5942 5942 2023 37741838 doi:10.1038/s41467-023-41640-9 2041-1723 8c0v FULLOVERLAP Peroxisomal AAA ATPase complex Pex1/Pex6("single seam" state) Peroxisomal AAA ATPase complex Pex1/Pex6("single seam" state) 0 1 2 3 0.774 Peroxisomal AAA ATPase complex Pex1/Pex6("single seam" state) 1 1 2 Saccharomyces cerevisiae Unknown peptide 1 3 Saccharomyces cerevisiae MH272-3f/alpha Peroxisomal ATPase PEX1 Saccharomyces cerevisiae 0.092758891 3 Saccharomyces cerevisiae LEVO TILKNGAIQLLKKVILRSTVCKMDFPKDNLFVVYISDGAQLPSQKGYASIVKCSLRQSKKSDSDNKSVGIPSKKIGVFIK CDSQIPENHIALSSHLWDAFFTHPMNGAKIKLEFLQMNQANIISGRNATVNIKYFGKDVPTKSGDQYSKLLGGSLLTNNL ILPTEQIIIEIKKGESEQQLCNLNEISNESVQWKVTQMGKEEVKDIIERHLPKHYHVKETGEVSRTSKDEDDFITVNSIK KEMVNYLTSPIIATPAIILDGKQGIGKTRLLKELINEVEKDHHIFVKYADCETLHETSNLDKTQKLIMEWCSFCYWYGPS LIVLDNVEALFGKPQANDGDPSNNGQWDNASKLLNFFINQVTKIFNKDNKRIRVLFSGKQKTQINPLLFDKHFVSETWSL RAPDKHARAKLLEYFFSKNQIMKLNRDLQFSDLSLETEGFSPLDLEIFTEKIFYDLQLERDCDNVVTRELFSKSLSAFTP SALRGVKLTKETNIKWGDIGALANAKDVLLETLEWPTKYEPIFVNCPLRLRSGILLYGYPGCGKTLLASAVAQQCGLNFI SVKGPEILNKFIGASEQNIRELFERAQSVKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTQMDGAEGLDGVYILAAT SRPDLIDSALLRPGRLDKSVICNIPTESERLDILQAIVNSKDKDTGQKKFALEKNADLKLIAEKTAGFSGADLQGLCYNA YLKSVHRWLSAADQSEVVPGNDNIEYFSINEHGRREENRLRLKTLLQQDVVHETKTSTSAASELTAVVTINDLLEACQET KPSISTSELVKLRGIYDRFQKDR P24004 3.6.4.- Peroxisomal ATPase PEX6 Saccharomyces cerevisiae 0.11568709399999999 3 Saccharomyces cerevisiae LEVO MKASLTFSLSGIYAPCSISRDIYLEYGDKKAECLYGTIRLPQYGPGCTPGKIVHCVLDDSLPFCSIVVPSKLFGFMPTQP TMDFCYFEPILDNVVPVLDSVTFLINEQLYSKLMDLPQEMQQIQFLHYKYNINSMETVVHSRDILTSGLCQILNCSPFPQ GLVDFTETQLILVNDTEQKLSALKYANEDEEYALPKIGTNSALSIDLESLPCTISRDLLRPAPHINDDNSIYAFTDAETL LRLDVTSGSFITVSNMGCVRLVKLFVLLLPNGFKKRTIYAPPKIIASFPDCSVVTISKSNIGHTDIPIANQVFISRVGGW LQSQKCFQNIILTTLKKFFSESKRILCQNDLIPIAFDSSMADLNIAEENDESDDEDELGQYYKNDSLVWFFVTSAELDCF SKDNSHFIIDPNRTKLITTNITNRRPLPLSRSNLQRYYGFAETFYYDLHIFPYVRQLVNILETSFNCSQRGITLNASVLL HSTTNNVGKATMVRFASKYLGIHLLEIDCLSLTSNSRQLDSTSKIIGYIRAKCENVLPYASPAVIFLAHLDSILLDVNAN QDPEAIKLQKSINFEMSKLLDDFTFKFPGTTFVGSVNNIDNVPSSFRSHMRFEILVPVPSEAQRLRIFQWYLSSHELNRD VQQKVPVSYMDNISFSSLSSYSAGLTPLDIKSIVETARMTATARFYQESKKCGWLPQSILITQEDLSKATSKARNEFSVS IGAPQIPNVTWDDIGGIDFVKGEILDTIDMPLKHPELFTSGMKKRSGILFYGPPGTGKTLMAKAIATNFSLNFFSVKGPE LLNMYIGESEANVRRVFQKAREAKPCVIFFDQIDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSTDADGVFVIGATNRP DLLDEALLRPGRFDKLLYLGIPDTDTKQLNILEALTRKFVLDNDVKLIELAKLCPFNYTGADFYALCSDAMLNAMSRIAR MVEKKVSQHNELTGENISTRRWFDKIATKEDTKVVVKMEDFLKAQEQLTPSVSRAELNHYEAVRANFEGA P33760 3.6.4.- unknown peptide Saccharomyces cerevisiae MH272-3f/alpha 0.000783958 1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) ADENOSINE-5'-TRIPHOSPHATE 0.000507181 10 ATP MAGNESIUM ION 2.4305e-05 10 MG ADENOSINE-5'-DIPHOSPHATE 0.000427201 2 ADP singleParticle particle 1.8 7.4 Quantifoil COPPER GLOW DISCHARGE ETHANE FEI VITROBOT MARK II
Grids were blotted for 3.5 sec and plunge-frozen after 1 sec drain time at 100% humidity.
FEI TITAN KRIOS SPOT SCAN BRIGHT FIELD FIELD EMISSION GUN 300 0.6 2.4 105000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Bioquantum GATAN K3 BIOQUANTUM (6k x 4k) 16763 60.0 1 1259079 EMD-2585 C1 4.1 FSC 0.143 CUT-OFF RELION 3.1.4 164610 MAXIMUM LIKELIHOOD SPHIRE 1.4 MAXIMUM LIKELIHOOD RELION 3.1.4 RELION 3.1.4 emd_16372.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 261.12 261.12 261.12 90.0 90.0 90.0 X Y Z -0.012870588 0.029848294 0.0001320825 0.0014757976 0.68 0.68 0.68 0.005 AUTHOR Unmasked and unmodified map generated with RELION. AB INITIO MODEL REAL emd_16372_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 261.12 261.12 261.12 90.0 90.0 90.0 X Y Z -10.185039 17.252486999999999 0.00012376215 0.5259213 0.68 0.68 0.68 AUTHOR Density-modified map. emd_16372_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 261.12 261.12 261.12 90.0 90.0 90.0 X Y Z -0.1487998 0.28686127 0.0019216199 0.012330472 0.68 0.68 0.68 AUTHOR Cryosparc NU-refined map emd_16372_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 261.12 261.12 261.12 90.0 90.0 90.0 X Y Z -0.023702916 0.033881046 0.00013218158 0.002929886 0.68 0.68 0.68 AUTHOR Unmasked half map 2 emd_16372_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 261.12 261.12 261.12 90.0 90.0 90.0 X Y Z -0.02427228 0.03211324 0.0001319815 0.0029268998 0.68 0.68 0.68 AUTHOR Unmasked half map 1