<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1633" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2009-07-08</deposition>
         <header_release>2009-07-21</header_release>
         <map_release>2009-07-21</map_release>
         <update>2012-10-10</update>
      </key_dates>
      <title>Structural analysis of substrate binding by the TatBC component of the twin-arginine protein transport system.</title>
      <authors_list>
         <author>Tarry MJ</author>
         <author>Schaefer E</author>
         <author>Chen S</author>
         <author>Buchanan G</author>
         <author>Greene NP</author>
         <author>Lea SM</author>
         <author>Palmer T</author>
         <author>Saibil HR</author>
         <author>Berks BC</author>
      </authors_list>
      <keywords>twin arginine, Tat, protein transport, blue native PAGE, single particle electron microscopy</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Tarry MJ</author>
               <author order="2">Schaefer E</author>
               <author order="3">Chen S</author>
               <author order="4">Buchanan G</author>
               <author order="5">Lea SM</author>
               <author order="6">Palmer T</author>
               <author order="7">Saibil HR</author>
               <author order="8">Berks BC</author>
               <title>Structural analysis of substrate binding by the TatBC component of the twin-arginine protein transport system.</title>
               <journal>PROC.NAT.ACAD.SCI.USA</journal>
               <volume>106</volume>
               <first_page>13284</first_page>
               <last_page>13289</last_page>
               <year>2009</year>
               <external_references type="PUBMED">19666509</external_references>
               <external_references type="DOI">doi:10.1073/pnas.0901566106</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>big tatBC structure.</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>big tatBC structure.</name>
            <number_unique_components>2</number_unique_components>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="tat">twin arginine transporter</name>
            <natural_source database="NCBI">
               <organism ncbi="562">Escherichia coli</organism>
            </natural_source>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.014</concentration>
               <staining>
                  <type>NEGATIVE</type>
                  <details>negatively stained with 2% (wt/vol) uranyl acetate on glow discharged, continuous carbon-coated 300 mesh copper grids (Agar Scientific).</details>
               </staining>
               <grid>
                  <details>300</details>
               </grid>
               <vitrification>
                  <cryogen_name>NONE</cryogen_name>
                  <instrument>OTHER</instrument>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TECNAI 12</microscope>
               <illumination_mode>OTHER</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>TUNGSTEN HAIRPIN</electron_source>
               <acceleration_voltage units="kV">120</acceleration_voltage>
               <nominal_defocus_min units="&#181;m">1.5</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">2.0</nominal_defocus_max>
               <nominal_magnification>42000.0</nominal_magnification>
               <specimen_holder_model>OTHER</specimen_holder_model>
               <details>Electron micrographs were recorded with low dose</details>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>ZEISS SCAI</scanner>
                        <sampling_interval units="&#181;m">7</sampling_interval>
                     </digitization_details>
                     <details>Micrographs were digitized on a Zeiss SCAI scanner at a pixel size of 7 microns, corresponding to 1.667 angstroms on the specimen. Subsequently, adjacent pixels were 3 x 3 averaged to yield a pixel size of 5 angstroms.</details>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>eucentric</specimen_holder>
               <tilt_angle_min>0</tilt_angle_min>
               <tilt_angle_max>50</tilt_angle_max>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <software_list>
                  <software>
                     <name>SPIDER</name>
                  </software>
               </software_list>
               <details>The tilted images were corrected for the effects of the contrast transfer function (CTF) by phase flipping, taking into account the defocus gradient across the micrographs and the position of each particle. Images were processed using SPIDER version 11.12 and 15.06. Three-dimensional reconstruction was performed by the random conical tilt method in SPIDER. The particles were windowed into 64 x 64 pixel boxes.</details>
               <number_images_used>911</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="1025">
      <file>emd_1633.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>64</col>
         <row>64</row>
         <sec>64</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>64</x>
         <y>64</y>
         <z>64</z>
      </spacing>
      <cell>
         <a units="&#8491;">320</a>
         <b units="&#8491;">320</b>
         <c units="&#8491;">320</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-3794.639999999999873</minimum>
         <maximum>3320.309999999999945</maximum>
         <average>-25.074100000000001</average>
         <std>321.862000000000023</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">5</x>
         <y units="&#8491;">5</y>
         <z units="&#8491;">5</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>920.0</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>This is a 3D map of a big TatBC complex.</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1633::::</details>
   </map>
</emd>