2025-07-09 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name STRUCTURE_SUMMARY em_admin em_software pdbx_entry_details _em_admin.last_update _em_software.name _pdbx_entry_details.has_protein_modification PDBe PDBe 2022-12-07 2023-04-05 2023-04-05 2025-07-09 European Molecular Biology Organization (EMBO) 8023 European Union Fondation ARC ARCDOC42020010001355 France Agence Nationale de la Recherche (ANR) ANR-17-CE11-0025 France Spanish Ministry of Science, Innovation, and Universities BFU2017-87397-P Spain Spanish National Research Council 2020AEP152 Spain European Regional Development Fund PID2020-116722GB-I00 European Union Nguyen PQ Fernandez-Tornero C targeted DNA integration, Ty1 retrotransposon, Ty1 integrase, RNA 19 polymerase III, transcription Nguyen PQ Huecas S Asif-Laidin A Plaza-Pegueroles A Capuzzi B Palmic N Conesa C Acker J Reguera J Lesage P Fernandez-Tornero C Nat Commun UK 14 1729 1729 2023 36977686 doi:10.1038/s41467-023-37109-4 2041-1723 EMD-14468 other EM volume 8bws FULLOVERLAP Structure of yeast RNA Polymerase III elongation complex at 3.3 A Structure of yeast RNA Polymerase III elongation complex at 3.3 A 0 1 2 3 4 5 6 7 8 10 11 12 13 14 15 16 17 18 19 20 Saccharomyces cerevisiae S288C DNA-directed RNA polymerase III subunit RPC1 Saccharomyces cerevisiae S288C ATCC 204508 / S288c 0.162517812 1 Saccharomyces cerevisiae S288C LEVO MKEVVVSETPKRIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSLECATCHGNLASCHGH FGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGAL NGVVKKAAAGAGSAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDDLNPLKTLNLFKQIKSADCE LLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQ LTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAK VLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSL HRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITG SYLISHKDSFYDRATLTQLLSMMSDGIEHFDIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKS LPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSIGINDVTPA DDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSK GSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTA ETGYMSRRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGLDPLEMEGNAQPVNFNRSWDHAYNITFNNQDKGLLPYAIM ETANEILGPLEERLVRYDNSGCLVKREDLNKAEYVDQYDAERDFYHSLREYINGKATALANLRKSRGMLGLLEPPAKELQ GIDPDETVPDNVKTSVSQLYRISEKSVRKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVT LGVPRIKEIINASKVISTPIINAVLVNDNDERAARVVKGRVEKTLLSDVAFYVQDVYKDNLSFIQVRIDLGTIDKLQLEL TIEDIAVAITRASKLKIQASDVNIIGKDRIAINVFPEGYKAKSISTSAKEPSENDVFYRMQQLRRALPDVVVKGLPDISR AVINIRDDGKRELLVEGYGLRDVMCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGD VMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKVVKGTNISEKD LVPKRCLFESLSNEAALKAN P04051 2.7.7.6 DNA-directed RNA polymerase III subunit RPC2 Saccharomyces cerevisiae S288C ATCC 204508 / S288c 0.129629383 1 Saccharomyces cerevisiae S288C LEVO MVAATKRRKTHIHKHVKDEAFDDLLKPVYKGKKLTDEINTAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKAN QLILSDVDPEFYLKYVDIRVGKKSSSSTKDYLTPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNK CILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNGKI YLKHNSIAEEIPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTIL QEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFK LSIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKS RKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSASLHLNYGVYLNGT LIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDF LKLGLVEYLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKR IDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYAN HTQDIIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSH IDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIE LISGKAGVLNGTLEYGTCFGGSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARAR GPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGWCTTCKSAENIIKMT IPYAAKLLFQELLSMNIAPRLRLEDIFQQ P22276 2.7.7.6 DNA-directed RNA polymerases I and III subunit RPAC1 Saccharomyces cerevisiae S288C ATCC 204508 / S288c 0.037732613 1 Saccharomyces cerevisiae S288C LEVO MSNIVGIEYNRVTNTTSTDFPGFSKDAENEWNVEKFKKDFEVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAA EYVYFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYNNA HVYARDLKFEPQGRQSTTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIK GESARRFQKCFPPGVIGIDEGSDEAYVKDARKDTVSREVLRYEEFADKVKLGRVRNHFIFNVESAGAMTPEEIFFKSVRI LKNKAEYLKNCPITQ P07703 DNA-directed RNA polymerase III subunit RPC9 Saccharomyces cerevisiae S288C ATCC 204508 / S288c 0.018623123 1 Saccharomyces cerevisiae S288C LEVO MKVLEERNAFLSDYEVLKFLTDLEKKHLWDQKSLAALKKSRSKGKQNRPYNHPELQGITRNVVNYLSINKNFINQEDEGE ERESSGAKDAEKSGISKMSDESFAELMTKLNSFKLFKAEKLQIVNQLPANMVHLYSIVEECDARFDEKTIEEMLEIISGY A P47076 DNA-directed RNA polymerases I, II, and III subunit RPABC1 Saccharomyces cerevisiae S288C 0.025117094 1 Saccharomyces cerevisiae S288C LEVO MDQENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWV EFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDE KRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM P20434 DNA-directed RNA polymerases I, II, and III subunit RPABC2 Saccharomyces cerevisiae S288C 0.017931833999999997 1 Saccharomyces cerevisiae S288C LEVO MSDYEEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQIRRKTLKEKAIPKDQRA TTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL P20435 DNA-directed RNA polymerase III subunit RPC8 Saccharomyces cerevisiae S288C ATCC 204508 / S288c 0.02434977 1 Saccharomyces cerevisiae S288C LEVO MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPF LGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKP KSPKERELEERAQLENEIEGKNEETPQNEKPPAYALLGSCQTDGMGLVSWWE P35718 DNA-directed RNA polymerases I, II, and III subunit RPABC3 Saccharomyces cerevisiae S288C 0.016525363 1 Saccharomyces cerevisiae S288C LEVO MSNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIASSLNLEDTPANDSSATRSWR PPQAGDRSLADDYDYVMYGTAYKFEEVSKDLIAVYYSFGGLLMRLEGNYRNLNNLKQENAYLLIRR P20436 DNA-directed RNA polymerase III subunit RPC10 Saccharomyces cerevisiae S288C ATCC 204508 / S288c 0.012525109 1 Saccharomyces cerevisiae S288C LEVO MLSFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWDNVDQTKTQCPNYDTCGGESA YFFQLQIRSADEPMTTFYKCVNCGHRWKEN Q04307 DNA-directed RNA polymerases I, II, and III subunit RPABC5 Saccharomyces cerevisiae S288C 0.008290732 1 Saccharomyces cerevisiae S288C LEVO MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKFLRYNPLEKRD P22139 DNA-directed RNA polymerases I and III subunit RPAC2 Saccharomyces cerevisiae S288C ATCC 204508 / S288c 0.01616786 1 Saccharomyces cerevisiae S288C LEVO MTEDIEQKKTATEVTPQEPKHIQEEEEQDVDMTGDEEQEEEPDREKIKLLTQATSEDGTSASFQIVEEDHTLGNALRYVI MKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTEKIKSM P28000 DNA-directed RNA polymerases I, II, and III subunit RPABC4 Saccharomyces cerevisiae S288C 0.008240599 1 Saccharomyces cerevisiae S288C LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)MSREGFQIPTNLDAAAAGTSQARTATLKYICAECSSKLSLSRTDAVRCKD CGHRILLKARTKRLVQFEAR P40422 DNA-directed RNA polymerase III subunit RPC5 Saccharomyces cerevisiae S288C ATCC 204508 / S288c 0.032178115 1 Saccharomyces cerevisiae S288C LEVO MSIDNKLFVTEEDEEDRTQDRADVEDESNDIDMIADENGTNSAIANEQEEKSEEVKAEDDTGEEEEDDPVIEEFPLKISG EEESLHVFQYANRPRLVGRKPAEHPFISAARYKPKSHLWEIDIPLDEQAFYNKDKAESEWNGVNVQTLKGVGVENNGQYA AFVKDMQVYLVPIERVAQLKPFFKYIDDANVTRKQEDARRNPNPSSQRAQVVTMSVKSVNDPSQNRLTGSLLAHKVADEE ANIELTWAEGTFEQFKDTIVKEAEDKTLVALEKQEDYIDNLV P36121 DNA-directed RNA polymerase III subunit RPC4 Saccharomyces cerevisiae S288C ATCC 204508 / S288c 0.046751469 1 Saccharomyces cerevisiae S288C LEVO MSSNKGNGRLPSLKDSSSNGGGSAKPSLKFKPKAVARKSKEEREAAASKVKLEEESKRGNDKKHFNNKNKRVTGAGGQQR RMAKYLNNTHVISSGPLAAGNFVSEKGDLRRGFIKSEGSGSSLVQKGLETIDNGAESSENEAEDDDNEGVASKSKKKFNM GKEFEARNLIEDEDDGESEKSSDVDMDDEEWRSKRIEQLFPVRPVRVRHEDVETVKREIQEALSEKPTREPTPSVKTEPV GTGLQSYLEERERQVNEKLADLGLEKEFQSVDGKEAAAELELLNADHQHILRKLKKMNNKPERFMVFQLPTRLPAFERPA VKEEKEDMETQASDPSKKKKNIKKKDTKDALSTRELAGKVGSIRVHKSGKLSVKIGNVVMDIGKGAETTFLQDVIALSIA DDASSAELLGRVDGKIVVTPQI P25441 DNA-directed RNA polymerase III subunit RPC3 Saccharomyces cerevisiae S288C ATCC 204508 / S288c 0.07411282000000001 1 Saccharomyces cerevisiae S288C LEVO MDELLGEALSAENQTGESTVESEKLVTPEDVMTISSLEQRTLNPDLFLYKELVKAHLGERAASVIGMLVALGRLSVRELV EKIDGMDVDSVKTTLVSLTQLRCVKYLQETAISGKKTTYYYYNEEGIHILLYSGLIIDEIITQMRVNDEEEHKQLVAEIV QNVISLGSLTVEDYLSSVTSDSMKYTISSLFVQLCEMGYLIQISKLHYTPIEDLWQFLYEKHYKNIPRNSPLSDLKKRSQ AKMNAKTDFAKIINKPNELSQILTVDPKTSLRIVKPTVSLTINLDRFMKGRRSKQLINLAKTRVGSVTAQVYKIALRLTE QKSPKIRDPLTQTGLLQDLEEAKSFQDEAELVEEKTPGLTFNAIDLARHLPAELDLRGSLLSRKPSDNKKRSGSNAAASL PSKKLKTEDGFVIPALPAAVSKSLQESGDTQEEDEEEEDLDADTEDPHSASLINSHLKILASSNFPFLNETKPGVYYVPY SKLMPVLKSSVYEYVIASTLGPSAMRLSRCIRDNKLVSEKIINSTALMKEKDIRSTLASLIRYNSVEIQEVPRTADRSAS RAVFLFRCKETHSYNFMRQNLEWNMANLLFKKEKLKQENSTLLKKANRDDVKGRENELLLPSELNQLKMVNERELNVFAR LSRLLSLWEVFQMA P32349 DNA-directed RNA polymerase III subunit RPC6 Saccharomyces cerevisiae S288C ATCC 204508 / S288c 0.036174160000000004 1 Saccharomyces cerevisiae S288C LEVO MSGMIENGLQLSDNAKTLHSQMMSKGIGALFTQQELQKQMGIGSLTDLMSIVQELLDKNLIKLVKQNDELKFQGVLESEA QKKATMSAEEALVYSYIEASGREGIWSKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSVKFPTRKIYMLYSLQPSVDIT GGPWFTDGELDIEFINSLLTIVWRFISENTFPNGFKNFENGPKKNVFYAPNVKNYSTTQEILEFITAAQVANVELTPSNI RSLCEVLVYDDKLEKVTHDCYRVTLESILQMNQGEGEPEAGNKALEDEEEFSIFNYFKMFPASKHDKEVVYFDEWTI P32910 DNA-directed RNA polymerase III subunit RPC7 Saccharomyces cerevisiae S288C 0.027752971 1 Saccharomyces cerevisiae S288C LEVO MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYINFGKTVKDGPFYTGSMSLIID QQENSKSGKRKPNIILDEDDTNDGIERYSDKYLKKRKIGISIDDHPYNLNLFPNELYNVMGINKKKLLAISKFNNADDVF TGTGLQDENIGLSMLAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYG DEEDPNEEAAF P17890 Non-template DNA Saccharomyces cerevisiae S288C 0.016039287 1 (DG)(DC)(DA)(DG)(DC)(DC)(DT)(DA)(DG)(DT)(DT)(DG)(DA)(DT)(DC)(DT)(DC)(DA)(DT)(DA) (DG)(DC)(DC)(DC)(DA)(DT)(DT)(DC)(DC)(DT)(DA)(DC)(DT)(DC)(DA)(DG)(DG)(DA)(DG)(DA) (DA)(DG)(DG)(DA)(DG)(DC)(DA)(DG)(DA)(DG)(DC)(DG) DNA Template DNA Saccharomyces cerevisiae S288C 0.015816094 1 (DC)(DG)(DC)(DT)(DC)(DT)(DG)(DC)(DT)(DC)(DC)(DT)(DT)(DC)(DT)(DC)(DC)(DT)(DT)(DT) (DC)(DC)(DT)(DC)(DT)(DC)(DG)(DA)(DT)(DG)(DG)(DC)(DT)(DA)(DT)(DG)(DA)(DG)(DA)(DT) (DC)(DA)(DA)(DC)(DT)(DA)(DG)(DG)(DC)(DT)(DG)(DC) DNA RNA Saccharomyces cerevisiae S288C 0.003264036 1 AUCGAGAGGA ZINC ION 6.5409e-05 6 ZN MAGNESIUM ION 2.4305e-05 1 MG (3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol 0.000378588 3 4QM singleParticle particle 0.7 7.5 ETHANE TFS TALOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 1.2 2.6 FEI FALCON III (4k x 4k) 30.96 1 Gctf PHASE FLIPPING AND AMPLITUDE CORRECTION 7Z2Z 3.2 FSC 0.5 CUT-OFF RELION 101928 ANGULAR RECONSTITUTION RELION MAXIMUM LIKELIHOOD RELION emd_16299_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 500 500 500 0 0 0 500 500 500 427.5 427.5 427.5 90.0 90.0 90.0 X Y Z -0.563222 1.4513898 0.0008568647 0.055491023 0.855 0.855 0.855 AUTHOR ::::EMDATABANK.org::::EMD-16299:::: RNA polymerase III-DNA complex half map B emd_16299_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 500 500 500 0 0 0 500 500 500 427.5 427.5 427.5 90.0 90.0 90.0 X Y Z -0.56159735 1.3126336 0.0008593191 0.055455755 0.855 0.855 0.855 AUTHOR ::::EMDATABANK.org::::EMD-16299:::: RNA polymerase III-DNA complex half map A