2024-07-24 REL PDBe PDBe PDBe 2022-11-30 2023-04-05 2023-04-05 2024-07-24 German Research Foundation (DFG) WI3285/8-1 Germany Swedish Research Council 2021-01146 Sweden ARE-ABCF VmlR2 bound to a 70S ribosome Crowe-McAuliffe C Wilson DN ABC, ABCF, ABC-F, VmlR2, antibiotic resistance, initiation, distorted P-tRNA, Shina-Dalgarno, Neobacillus vireti, Bacillus subtilis, RIBOSOME Obana N Takada H Crowe-McAuliffe C Iwamoto M Egorov AA Wu KJY Chiba S Murina V Paternoga H Tresco BIC Nomura N Myers AG Atkinson GC Wilson DN Hauryliuk V Genome-encoded ABCF factors implicated in intrinsic antibiotic resistance in Gram-positive bacteria: VmlR2, Ard1 and CplR. Nucleic Acids Res. UK 51 4536 4554 2023 36951104 doi:10.1093/nar/gkad193 1362-4962 0389 NARHAD 8buu FULLOVERLAP 70S ribosome with VmlR2 bound in the E site, a distorted tRNA in the P site, and a substoichiometric distorted tRNA in the A site 70S ribosome with VmlR2 bound in the E site, a distorted tRNA in the P site, and a substoichiometric distorted tRNA in the A site 0 25 20 51 26 1 2 12 14 15 16 21 22 27 28 29 30 31 3 4 5 6 7 8 9 10 11 13 17 18 19 23 24 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 Neobacillus vireti 2.5 23S rRNA Bacillus subtilis subsp. subtilis str. 168 0.949339125 1 GGUUAAGUUAGAAAGGGCGCACGGUGGAUGCCUUGGCACUAGGAGCCGAUGAAGGACGGGACGAACACCGAUAUGCUUCG GGGAGCUGUAAGCAAGCUUUGAUCCGGAGAUUUCCGAAUGGGGAAACCCACCACUCGUAAUGGAGUGGUAUCCAUAUCUG AAUUCAUAGGAUAUGAGAAGGCAGACCCGGGGAACUGAAACAUCUAAGUACCCGGAGGAAGAGAAAGCAAAUGCGAUUCC CUGAGUAGCGGCGAGCGAAACGGGAUUAGCCCAAACCAAGAGGCUUGCCUCUUGGGGUUGUAGGACACUCUGUACGGAGU UACAAAGGAACGAGGUAGAUGAAGAGGUCUGGAAAGGCCCGCCAUAGGAGGUAACAGCCCUGUAGUCAAAACUUCGUUCU CUCCUGAGUGGAUCCUGAGUACGGCGGAACACGUGAAAUUCCGUCGGAAUCCGGGAGGACCAUCUCCCAAGGCUAAAUAC UCCCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAGAGAUCCUGAA ACCGUGUGCCUACAAGUAGUCAGAGCCCGUUAACGGGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUCC CGUGCAAGGUUAAGCAGAAGAUGCGGAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGCAUGAGUACGUGGUCGUAGACCC GAAACCAGGUGAUCUACCCAUGUCCAGGGUGAAGUUCAGGUAACACUGAAUGGAGGCCCGAACCCACGCACGUUGAAAAG UGCGGGGAUGAGGUGUGGGUAGGGGUGAAAUGCCAAUCGAACCUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGC UAGCCUCAAGGUAAGAGUCUUGGAGGUAGAGCACUGAUUGGACUAGGGGCCCCUACCGGGUUACCGAAUUCAGUCAAACU CCGAAUGCCAAUGACUUAUCCUUGGGAGUCAGACUGCGAGUGAUAAGAUCCGUAGUCGAAAGGGAAACAGCCCAGACCGC CAGCUAAGGUCCCAAAGUAUACGUUAAGUGGAAAAGGAUGUGGAGUUGCUUAGACAACUAGGAUGUUGGCUUAGAAGCAG CCACCAUUUAAAGAGUGCGUAAUAGCUCACUGGUCGAGUGACUCUGCGCCGAAAAUGUACCGGGGCUAAACGUAUCACCG AAGCUGCGGACUGUUCUUCGAACAGUGGUAGGAGAGCGUUCUAAGGGCUGUGAAGCCAGACCGGAAGGACUGGUGGAGCG CUUAGAAGUGAGAAUGCCGGUAUGAGUAGCGAAAGAGGGGUGAGAAUCCCCUCCACCGAAUGCCUAAGGUUUCCUGAGGA AGGCUCGUCCGCUCAGGGUUAGUCGGGACCUAAGCCGAGGCCGAAAGGCGUAGGCGAUGGACAACAGGUUGAUAUUCCUG UACCACCUCCUCACCAUUUGAGCAAUGGGGGGACGCAGGAGGAUAGGGUAAGCGCGGUAUUGGAUAUCCGCGUCCAAGCA GUUAGGCUGGGAAAUAGGCAAAUCCGUUUCCCAUAAGGCUGAGCUGUGAUGGCGAGCGAAAUAUAGUAGCGAAGUUCCUG AUUCCACACUGCCAAGAAAAGCCUCUAGCGAGGUGAGAGGUGCCCGUACCGCAAACCGACACAGGUAGGCGAGGAGAGAA UCCUAAGGUGAUCGAGAGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUGUUA GGGUGCAAGCCCGAGAGAGCCGCAGUGAAUAGGCCCAGGCGACUGUUUAGCAAAAACACAGGUCUCUGCGAAGCCGUAAG GCGAAGUAUAGGGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAGCGCUUAGCGUAAGCGAAGGUGCGAAUUGAAG CCCCAGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCCGCACGAAA GGCGCAACGAUCUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUUAUAGUACCUGUGAAGAUGCAGGUUACCCGCGACA GGACGGAAAGACCCCGUGGAGCUUUACUGCAGCCUGAUAUUGAAUGUUGGUACAGCUUGUACAGGAUAGGUAGGAGCCUU GGAAACCGGAGCGCCAGCUUCGGUGGAGGCAUCGGUGGGAUACUACCCUGGCUGUAUUGACCUUCUAACCCGCCGCCCUU AUCGGGCGGGGAGACAGUGUCAGGUGGGCAGUUUGACUG(OMG)GGCGGUCGCCUCCUAAAAGGUAACGGAGGCGCCCAA AGGUUCCCUCAGAAUGGUUGGAAAUCAUUCGCAGAGUGUAAAGGCACAAGGGAGCUUGACUGCGAGACCUACAAGUCGAG CAGGGACGAAAGUCGGGCUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCCGGGG AUAACAGGCUUAUCUCCCCCAAGAGUCCACAUCGACGGGGAGGUUUGGCACCUCGAUGUCGGCUCAUCGCAUCCUGGGGC UGUAGUCAGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCG GUCCCUAUCCGUCGCGGGCGCAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACGCACCGCUGGU G(PSU)ACCAGUUGUUCUGCCAAGGGCAUCGCUGGGUAGCUAUGUGCGGACGGGAUAAGUGCUGAAAGCAUCUAAGCAUG AAGCCCCCCUCAAGAUGAGAUUUCCCAUUCCGCAAGGAAGUAAGAUCCCUGAAAGAUGAUCAGGUUGAUAGGUCUGAGGU GGAAGUGUGGCGACACAUGGAGCUGACAGAUACUAAUCGAUCGAGGACUUAACCA 5S rRNA Bacillus subtilis subsp. subtilis str. 168 0.038423862999999996 1 UUUGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUCG GGGGUUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCAAG CP053102.1 50S ribosomal protein L2 Bacillus subtilis subsp. subtilis str. 168 0.030335124999999998 1 LEVO MAIKKYKPTSNGRRGMTTSDFAEITTDKPEKSLLAPLHKKGGRNNQGKLTVRHQGGGHKRQYRVIDFKRDKDGIPGRVAT VEYDPNRSANIALINYADGEKRYILAPKGIQVGTEIMSGPEADIKVGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGT SAQVLGKEGKYVLVRLNSGEVRMILSACRASIGQVGNEQHELINIGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGRAP IGRKSPMSPWGKPTLGFKTRKKKNKSDKFIVRRRKNK P42919 50S ribosomal protein L3 Bacillus subtilis subsp. subtilis str. 168 0.022723348 1 LEVO MTKGILGRKIGMTQVFAENGDLIPVTVIEAAPNVVLQKKTAENDGYEAIQLGFDDKREKLSNKPEKGHVAKAETAPKRFV KELRGVEMDAYEVGQEVKVEIFSAGEIVDVTGVSKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMGPVDPNRVFKGKLL PGRMGGEQITVQNLEIVKVDAERNLLLIKGNVPGAKKSLITVKSAVKSK P42920 50S ribosomal protein L4 Bacillus subtilis subsp. subtilis str. 168 0.022424951 1 LEVO MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRS PQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVIDNNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADAN EAVALSARNIPGVTVVEANGINVLDVVNHEKLLITKAAVEKVEEVLA P42921 50S ribosomal protein L5 Bacillus subtilis subsp. subtilis str. 168 0.020177564 1 LEVO MNRLKEKYNKEIAPALMTKFNYDSVMQVPKIEKIVINMGVGDAVQNAKAIDSAVEELTFIAGQKPVVTRAKKSIAGFRLR EGMPIGAKVTLRGERMYDFLDKLISVSLPRVRDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVTKVRGMDIVIVTTA NTDEEARELLTQVGMPFQK P12877 50S ribosomal protein L6 Bacillus subtilis subsp. subtilis str. 168 0.019543388999999998 1 LEVO MSRVGKKLLEIPSDVTVTLNDNNTVAVKGPKGELTRTFHPDMEIKVEDNVLTVARPSDQKEHRALHGTTRSLLGNMVEGV SKGFERGLELVGVGYRASKSGNKLVLNVGYSHPVEIVPEEGIEIEVPSQTKVVVKGTDKERVGAIAANIRAVRSPEPYKG KGIRYEGEVVRRKEGKSAK P46898 50S ribosomal protein L13 Bacillus subtilis subsp. subtilis str. 168 0.016407104 1 LEVO MRTTPMANASTIERKWLVVDAAGKTLGRLSSEVAAILRGKHKPTYTPHVDTGDHVIIINAEKIELTGKKLTDKIYYRHTQ HPGGLKSRTALEMRTNYPEKMLELAIKGMLPKGSLGRQMFKKLNVYRGSEHPHEAQKPEVYELRG P70974 50S ribosomal protein L14 Bacillus subtilis subsp. subtilis str. 168 0.013175288 1 LEVO MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVKQATPGGVVKKGEVVKAVIVRTKSGARRSDGSYISFD ENACVIIRDDKSPRGTRIFGPVARELRENNFMKIVSLAPEVI P12875 50S ribosomal protein L15 Bacillus subtilis subsp. subtilis str. 168 0.015410693999999999 1 LEVO MKLHELKPSEGSRKTRNRVGRGIGSGNGKTAGKGHKGQNARSGGGVRPGFEGGQMPLFQRLPKRGFTNINRKEYAVVNLD KLNGFAEGTEVTPELLLETGVISKLNAGVKILGNGKLEKKLTVKANKFSASAKEAVEAAGGTAEVI P19946 50S ribosomal protein L16 Bacillus subtilis subsp. subtilis str. 168 0.016223049 1 LEVO MLLPKRVKYRREHRGKMRGRAKGGTEVHFGEFGIQALEASWITNRQIEAARIAMTRYMKRGGKVWIKIFPSKPYTAKPLE VRMGSGKGAPEGWVAVVKPGKVLFEISGVSEEVAREALRLASHKLPIKTKFVKREEIGGESNES P14577 50S ribosomal protein L17 Bacillus subtilis subsp. subtilis str. 168 0.013774806 1 LEVO MSYRKLGRTSAQRKAMLRDLTTDLIINERIETTETRAKELRSVVEKMITLGKRGDLHARRQAAAYIRNEVANEENNQDAL QKLFSDIATRYEERQGGYTRIMKLGPRRGDGAPMAIIELV P20277 50S ribosomal protein L18 Bacillus subtilis subsp. subtilis str. 168 0.012993828999999998 1 LEVO MITKTSKNAARLKRHARVRAKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLDKDLNVESTGDTSAATKVGEL VAKRAAEKGISDVVFDRGGYLYHGRVKALADAAREAGLKF P46899 50S ribosomal protein L19 Bacillus subtilis subsp. subtilis str. 168 0.013416852999999998 1 LEVO MQKLIEDITKEQLRTDLPAFRPGDTLRVHVKVVEGNRERIQIFEGVVIKRRGGGISETFTVRKISYGVGVERTFPVHTPK IAKIEVVRYGKVRRAKLYYLRELRGKAARIKEIRR O31742 50S ribosomal protein L20 Bacillus subtilis subsp. subtilis str. 168 0.013669189 1 LEVO MPRVKGGTVTRKRRKKVLKLAKGYFGSKHTLYKVANQQVMKSGNYAFRDRRQKKRDFRKLWITRINAAARMNGLSYSRLM HGLKLSGIEVNRKMLADLAVNDLTAFNQLADAAKAQLNK P55873 50S ribosomal protein L21 Bacillus subtilis subsp. subtilis str. 168 0.011296081 1 LEVO MYAIIKTGGKQIKVEEGQTVYIEKLAAEAGETVTFEDVLFVGGDNVKVGNPTVEGATVTAKVEKQGRAKKITVFRYKPKK NVHKKQGHRQPYTKVTIEKINA P26908 50S ribosomal protein L22 Bacillus subtilis subsp. subtilis str. 168 0.012481608 1 LEVO MQAKAVARTVRIAPRKARLVMDLIRGKQVGEAVSILNLTPRAASPIIEKVLKSAIANAEHNYEMDANNLVISQAFVDEGP TLKRFRPRAMGRASQINKRTSHITIVVSEKKEG P42060 50S ribosomal protein L23 Bacillus subtilis subsp. subtilis str. 168 0.010978813 1 LEVO MKDPRDVLKRPVITERSADLMTEKKYTFEVDVRANKTEVKDAVESIFGVKVDKVNIMNYKGKSKRVGRYTGMTSRRRKAI VKLTADSKEIEIFEA P42924 50S ribosomal protein L24 Bacillus subtilis subsp. subtilis str. 168 0.01116612 1 LEVO MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKPTQANPQGGISNQEAPIHVSNVMPLDPKTGEVTR VGYKVEDGKKVRVAKKSGQVLDK P0CI78 tRNA-fMet Bacillus subtilis subsp. subtilis str. 168 0.02478777 1 CGCGGGGUGGAGCAGUUCGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGCAGGUUCAAAUCCUGCCCCCGCAACCA 50S ribosomal protein L27 Bacillus subtilis subsp. subtilis str. 168 0.010391854999999998 1 LEVO MLRLDLQFFASKKGVGSTKNGRDSEAKRLGAKRADGQFVTGGSILYRQRGTKIYPGENVGRGGDDTLFAKIDGTVKFERF GRDRKKVSVYPVAQ P05657 50S ribosomal protein L28 Bacillus subtilis subsp. subtilis str. 168 0.006826144 1 LEVO MARKCVITGKKTTAGNNRSHAMNASKRTWGANLQKVRILVNGKPKKVYVSARALKSGKVERV P37807 50S ribosomal protein L29 Bacillus subtilis subsp. subtilis str. 168 0.007728029 1 LEVO MKANEIRDLTTAEIEQKVKSLKEELFNLRFQLATGQLENTARIREVRKAIARMKTVIREREIAANK P12873 50S ribosomal protein L30 Bacillus subtilis subsp. subtilis str. 168 0.006650795 1 LEVO MAKLEITLKRSVIGRPEDQRVTVRTLGLKKTNQTVVHEDNAAIRGMINKVSHLVSVKEQ P19947 30S ribosomal protein S2 Bacillus subtilis subsp. subtilis str. 168 0.028009297
uS2 small ribosomal subunit protein
1 LEVO MSVISMKQLLEAGVHFGHQTRRWNPKMKRYIFTERNGIYIIDLQKTVKKVEEAYNFTKNLAAEGGKILFVGTKKQAQDSV KEEAQRSGMYYVNQRWLGGTLTNFETIQKRIKRLKDIEKMQENGTFDVLPKKEVVQLKKELERLEKFLGGIKDMKDLPDA LFIIDPRKERIAVAEARKLNIPIIGIVDTNCDPDEIDVVIPANDDAIRAVKLLTSKMADAILEAKQGEEEAEVAEETAPE TETTTA P21464 mRNA Bacillus subtilis subsp. subtilis str. 168 0.004128384 1 GGAGGU(N)(N)(N)(N)(N)(N)AUG 50S ribosomal protein L32 Bacillus subtilis subsp. subtilis str. 168 0.006745073 1 LEVO MAVPFRRTSKMKKRLRRTHFKLNVPGMTECPSCGEMKLSHRVCKACGSYNGKDINVKSN O34687 50S ribosomal protein L33 1 Bacillus subtilis subsp. subtilis str. 168 0.005915875 1 LEVO MRVNITLACTECGERNYISKKNKRNNPDRVEFKKYCPRDKKSTLHRETK P56849 50S ribosomal protein L34 Bacillus subtilis subsp. subtilis str. 168 0.005271332 1 LEVO MKRTFQPNNRKRSKVHGFRSRMSSKNGRLVLARRRRKGRKVLSA P05647 50S ribosomal protein L35 Bacillus subtilis subsp. subtilis str. 168 0.0075811279999999995 1 LEVO MPKMKTHRGSAKRFKKTGSGKLKRSHAYTSHLFANKSQKQKRKLRKSAVVSAGDFKRIKQMLANIK P55874 50S ribosomal protein L36 Bacillus subtilis subsp. subtilis str. 168 0.004318422 1 LEVO MKVRPSVKPICEKCKVIRRKGKVMVICENPKHKQKQG P20278 30S ribosomal protein S6 Bacillus subtilis subsp. subtilis str. 168 0.011140548 1 LEVO MRKYEVMYIIRPNIDEESKKAVIERFNNVLTSNGAEITGTKDWGKRRLAYEINDFRDGFYQIVNVQSDAAAVQEFDRLAK ISDDIIRHIVVKEEE P21468 30S ribosomal protein S16 Bacillus subtilis subsp. subtilis str. 168 0.010153833 1 LEVO MAVKIRLKRMGAKKSPFYRIVVADSRSPRDGRFIETVGTYNPVAKPAEVKIDEELALKWLQTGAKPSDTVRNLFSSQGIM EKFHNAKQGK P21474 30S ribosomal protein S18 Bacillus subtilis subsp. subtilis str. 168 0.008990613 1 LEVO MAGGRRGGRAKRRKVCYFTSNGITHIDYKDVDLLKKFVSERGKILPRRVTGTNAKYQRKLTAAIKRARQMALLPYVSGE P21475 30S ribosomal protein S20 Bacillus subtilis subsp. subtilis str. 168 0.009622217 1 LEVO MPNIKSAIKRTKTNNERRVHNATIKSAMRTAIKQVEASVANNEADKAKTALTEAAKRIDKAVKTGLVHKNTAARYKSRLA KKVNGLSA P21477 30S ribosomal protein S4 Bacillus subtilis subsp. subtilis str. 168 0.022874270999999998 1 LEVO MARYTGPSWKLSRRLGISLSGTGKELEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRHMYGVNERQFRTLFDKAGKLAG KHGENFMILLDSRLDNVVYKLGLARTRRQARQLVNHGHILVDGSRVDIPSYLVKPGQTIGVREKSRNLSIIKESVEVNNF VPEYLTFDAEKLEGTFTRLPERSELAPEINEALIVEFYSR P21466 30S ribosomal protein S5 Bacillus subtilis subsp. subtilis str. 168 0.017650625 1 LEVO MRRIDPSKLELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEVPMVGTT IPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVADILSKSLGSNTPINMIRATLQGLSELKRAEDVAKLRGKS VEELLG P21467 30S ribosomal protein S8 Bacillus subtilis subsp. subtilis str. 168 0.014901426999999998 1 LEVO MVMTDPIADMLTRIRNANMVRHEKLEIPASKLKREIAEILKREGFIRDVEFVEDSKQGIIRVFLKYGQNNERVITGLKRI SKPGLRVYAKSNEVPRVLNGLGIAIISTSQGVLTDKEARAKQAGGEVLAYVW P12879 16S rRNA Bacillus subtilis subsp. subtilis str. 168 0.503353125 1 UUUAUCGGAGAGUUUGAUCCUGGCUCAGGACGAACGCUGGCGGCGUGCCUAAUACAUGCAAGUCGAGCGGACAGAUGGGA GCUUGCUCCCUGAUGUUAGCGGCGGACGGGUGAGUAACACGUGGGUAACCUGCCUGUAAGACUGGGAUAACUCCGGGAAA CCGGGGCUAAUACCGGAUGGUUGUUUGAACCGCAUGGUUCAAACAUAAAAGGUGGCUUCGGCUACCACUUACAGAUGGAC CCGCGGCGCAUUAGCUAGUUGGUGAGGUAACGGCUCACCAAGGCGACGAUGCGUAGCCGACCUGAGAGGGUGAUCGGCCA CACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUCUUCCGCAAUGGACGAAAGUCUGACGGA GCAACGCCGCGUGAGUGAUGAAGGUUUUCGGAUCGUAAAGCUCUGUUGUUAGGGAAGAACAAGUACCGUUCGAAUAGGGC GGUACCUUGACGGUACCUAACCAGAAAGCCACGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGUGGCAAGCGUU GUCCGGAAUUAUUGGGCGUAAAGGGCUCGCAGGCGGUUUCUUAAGUCUGAUGUGAAAGCCCCCGGCUCAACCGGGGAGGG UCAUUGGAAACUGGGGAACUUGAGUGCAGAAGAGGAGAGUGGAAUUCCACGUGUAGCGGUGAAAUGCGUAGAGAUGUGGA GGAACACCAGUGGCGAAGGCGACUCUCUGGUCUGUAACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGA UACCCUGGUAGUCCACGCCGUAAACGAUGAGUGCUAAGUGUUAGGGGGUUUCCGCCCCUUAGUGCUGCAGCUAACGCAUU AAGCACUCCGCCUGGGGAGUACGGUCGCAAGACUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUG UGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAGGUCUUGACAUCCUCUGACAAUCCUAGAGAUAGGACGUCCCCUUC GGGGGCAGAGUGACAGGUGGUGCAUGGUUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAA CCCUUGAUCUUAGUUGCCAGCAUUCAGUUGGGCACUCUAAGGUGACUGCCGGUGACAAACCGGAGGAAGGUGGGGAUGAC GUCAAAUCAUCAUGCCCCUUAUGACCUGGGCUACACACGUGCUACAAUGGACAGAACAAAGGGCAGCGAAACCGCGAGGU UAAGCCAAUCCCACAAAUCUGUUCUCAGUUCGGAUCGCAGUCUGCAACUCGACUGCGUGAAGCUGGAAUCGCUAGUAAUC GCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCACGAGAGUUUGUAACACCCG AAGUCGGUGAGGUAACCUUUUAGGAGCCAGCCGCCGAAGGUGGGACAGAUGAUUGGGGUGAAGUCGUAACAAGGUAGCCG UAUCGGAAGGUGCGGCUGGAUCACCUCCUUUCUA 30S ribosomal protein S11 Bacillus subtilis subsp. subtilis str. 168 0.013951999999999999 1 LEVO MAAARKSNTRKRRVKKNIESGIAHIRSTFNNTIVTITDTHGNAISWSSAGALGFRGSRKSTPFAAQMAAETAAKGSIEHG LKTLEVTVKGPGSGREAAIRALQAAGLEVTAIRDVTPVPHNGCRPPKRRRV P04969 30S ribosomal protein S12 Bacillus subtilis subsp. subtilis str. 168 0.015248736 1 LEVO MPTINQLIRKGRVSKVENSKSPALNKGYNSFKKEHTNVSSPQKRGVCTRVGTMTPKKPNSALRKYARVRLTNGIEVTAYI PGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVENRAQGRSKYGTKKPKAK P21472 30S ribosomal protein S15 Bacillus subtilis subsp. subtilis str. 168 0.010597223999999999 1 LEVO MAITQERKNQLINEFKTHESDTGSPEVQIAILTDSINNLNEHLRTHKKDHHSRRGLLKMVGKRRNLLTYLRNKDVTRYRE LINKLGLRR P21473 30S ribosomal protein S17 Bacillus subtilis subsp. subtilis str. 168 0.010220978999999998 1 LEVO MSERNQRKVYQGRVVSDKMDKTITVVVETYKKHTLYGKRVKYSKKFKAHDENNQAKIGDIVKIMETRPLSATKRFRLVEV VEEAVII P12874 30S ribosomal protein S3 Bacillus subtilis subsp. subtilis str. 168 0.024364887 1 LEVO MGQKVNPVGLRIGVIRDWESKWYAGKDYADFLHEDLKIREYISKRLSDASVSKVEIERAANRVNITIHTAKPGMVIGKGG SEVEALRKALNSLTGKRVHINILEIKRADLDAQLVADNIARQLENRVSFRRAQKQQIQRTMRAGAQGVKTMVSGRLGGAD IARSEYYSEGTVPLHTLRADIDYATSEADTTYGKLGVKVWIYRGEVLPTKKKNEEGGK P21465 30S ribosomal protein S7 Bacillus subtilis subsp. subtilis str. 168 0.017915879 1 LEVO MPRKGPVAKRDVLPDPIYNSKLVSRLINKMMIDGKKGKSQTILYKSFDIIKERTGNDAMEVFEQALKNIMPVLEVKARRV GGANYQVPVEVRPERRTTLGLRWLVNYARLRGEKTMEERLANEILDAANNTGAAVKKREDTHKMAEANKAFAHYRW P21469 30S ribosomal protein S9 Bacillus subtilis subsp. subtilis str. 168 0.014335504 1 LEVO MAQVQYYGTGRRKSSVARVRLVPGEGRIVVNNREISEHIPSAALIEDIKQPLTLTETAGTYDVLVNVHGGGLSGQAGAIR HGIARALLEADPEYRTTLKRAGLLTRDARMKERKKYGLKGARRAPQFSKR P21470 30S ribosomal protein S10 Bacillus subtilis subsp. subtilis str. 168 0.011687661 1 LEVO MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPTEKSVYTILRAVHKYKDSREQFEMRTHKRLIDIVNPT PQTVDALMRLDLPSGVDIEIKL P21471 30S ribosomal protein S13 Bacillus subtilis subsp. subtilis str. 168 0.013818084999999999 1 LEVO MARIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDIIDKLKVEGDLRREVSLNIKRL IEIGSYRGIRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK P20282 30S ribosomal protein S14 Bacillus subtilis subsp. subtilis str. 168 0.007263802999999999 1 LEVO MAKKSMIAKQQRTPKFKVQEYTRCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKASW P12878 30S ribosomal protein S19 Bacillus subtilis subsp. subtilis str. 168 0.010607308999999999 1 LEVO MARSLKKGPFVDGHLMTKIEKLNETDKKQVVKTWSRRSTIFPQFIGHTIAVYDGRKHVPVFISEDMVGHKLGEFAPTRTY KGHASDDKKTRR P21476 ExpZ Neobacillus vireti 0.07216787499999999
EQ2 variant with C-terminal his tag, Tobacco Etch Virus protease cleavage site, and FLAG tag.
1 Bacillus subtilis subsp. subtilis str. 168 LEVO MFKNQRTIVKVSGLEKSFHLRKVLQNLHFEIKNGDRIGLVGYNGTGKTTLANIIFGKITPDNGLIEKSRDLRMGYLSQSI DYEVSHFQQSIAEVEEHELFQHASSLGLNKVFDWSEDRLTHLSGGEKLKLALSMVWATKPDFLILDQPTNHLDFTGINWL VSELEKFHGPVLIISHDRHFLDKTVNRIFELEESRIQFFNGNYSDYRIEKEQRIANQRHQYQVQQRQIEKIETQMVQLKS WSEKAHRDSTKQGSASERRQIGFKEYHRVKAKKLDNQVKSKMKRLQNELNKHKLEKPNEEAAVRFQFDSHGKRGKRIIEA KKLTKMFDDRILFQDSPFYINHGDRIGLLGENGCGKTTLIKMILGDDLSFVGELWKSDSVKIAYLSQDVADLSADKTAIE ALGFTDRESILKARTLLANLGLKEQLITKPIGTLSLGERTRVKLVDMLMKEYDVLILDQPTNHLDLPSREQLEQTLSEFT GTIITVSHDHYFLNKLCDRLLVFENQQIKRFEMKPQEYLNKDVKSGDRSEEAMLIIENKIALILGELSLIDQNNPKYYRL DEEFNELLKQKRNLKGKSGGHHHHHHAKGGENLYFQGVADYKDHDGDYKDHDIDYKDDDDKG W1SM44 POTASSIUM ION 3.9098e-05 16 K MAGNESIUM ION 2.4305e-05 85 MG ZINC ION 6.5409e-05 4 ZN ADENOSINE-5'-TRIPHOSPHATE 0.000507181 2 ATP singleParticle particle 7.5 Quantifoil R2/2 COPPER CARBON CONTINUOUS 2.0 GLOW DISCHARGE ETHANE 100 277 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.7000000000000001 1.9000000000000001 165000.0 GATAN K2 SUMMIT (4k x 4k) 28.25 1 2797082 EMD-0176 1 FOURIER SPACE 2.9 FSC 0.143 CUT-OFF RELION
RELION 3D autorefine.
140804 MAXIMUM LIKELIHOOD RELION MAXIMUM LIKELIHOOD 4 RELION emd_16246.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 390 390 390 0 0 0 390 390 390 319.8 319.8 319.8 90.0 90.0 90.0 X Y Z -0.018725375 0.045374934 -0.0006800585 0.0038303558 0.82 0.82 0.82 0.012 AUTHOR Neobacillus subtilis VmlR2 in complex with 70S initiating ribosome from Bacillus subtilis. Unsharpened map from RELION 3D auto-refinement. Map-model cross correlation and MolProbity score REAL emd_16246_msk_1.map emd_16246_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 390 390 390 0 0 0 390 390 390 319.8 319.8 319.8 90.0 90.0 90.0 X Y Z -0.14028533 0.22809884 0.0007984045 0.0088409465 0.82 0.82 0.82 AUTHOR Neobacillus subtilis VmlR2 in complex with 70S initiating ribosome from Bacillus subtilis. Map sharpened with B factor determined by Guinier analysis. emd_16246_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 390 390 390 0 0 0 390 390 390 319.8 319.8 319.8 90.0 90.0 90.0 X Y Z -0.023647064 0.058241777 -0.0002763907 0.0047262236 0.82 0.82 0.82 AUTHOR Neobacillus subtilis VmlR2 in complex with 70S initiating ribosome from Bacillus subtilis. Half map from RELION 3D auto-refinement. emd_16246_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 390 390 390 0 0 0 390 390 390 319.8 319.8 319.8 90.0 90.0 90.0 X Y Z -0.024516068 0.056786526 -0.00027445873 0.0047335457 0.82 0.82 0.82 AUTHOR Neobacillus subtilis VmlR2 in complex with 70S initiating ribosome from Bacillus subtilis. Half map from RELION 3D auto-refinement.