2023-12-13 REL PDBe PDBe PDBe 2022-11-22 2022-12-28 2022-12-28 2023-12-13 UK Research and Innovation (UKRI) MC UP A025 1013 United Kingdom UK Research and Innovation (UKRI) MC UP 1201/ United Kingdom European Research Council (ERC) ERCCoG- 2014 European Union European Research Council (ERC) ERC StG-2019 European Union Max Planck Society J.A.G.B. Germany HIV-1 CA-SP1 subtomogram average with Relion4 from EMPIAR-10164 dataset, 3.2 A from 5 tomograms Ke Z Briggs JAG Scheres SHW HIV-1 CA-SP1, data from EMPIAR-10164, VIRAL PROTEIN Zivanov J Oton J Ke Z von Kugelgen A Pyle E Qu K Morado D Castano-Diez D Zanetti G Bharat TAM Briggs JAG Scheres SHW A Bayesian approach to single-particle electron cryo-tomography in RELION-4.0. Elife US 11 2022 36468689 doi:10.7554/eLife.83724 2050-084X Human immunodeficiency virus 1 Human immunodeficiency virus 1 0
HIV-1 dMACANC virus-like particles assembled in the presence of BVM.
Human immunodeficiency virus 1 0.074 VIRUS-LIKE PARTICLE STRAIN true true subtomogramAveraging particle 8.0 ETHANE FEI TITAN KRIOS OTHER BRIGHT FIELD FIELD EMISSION GUN 300 1.5 5.0 GATAN K2 QUANTUM (4k x 4k) 3.0 1 C6 3.2 FSC 0.143 CUT-OFF RELION 4.0 Relion4 tomo 12910 5 12910 MAXIMUM LIKELIHOOD RELION 4.0 Relion4 tomo
Relion-4.0 software
 emd_16207.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 192 192 192 0 0 0 192 192 192 259.2 259.2 259.2 90.0 90.0 90.0 X Y Z -2.128219 3.1128023 0.016940147 0.17220247 1.35 1.35 1.35 0.8 AUTHOR HIV-1 Capsid subtomogram average from 5 tomograms using relion4 tomo software. Map from postprocess job. emd_16207_msk_1.map emd_16207_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 192 192 192 0 0 0 192 192 192 259.2 259.2 259.2 90.0 90.0 90.0 X Y Z -0.7109335 1.365186 0.017014146 0.08713727 1.35 1.35 1.35 AUTHOR HIV-1 Capsid subtomogram average from 5 tomograms using relion4 tomo software. Half1 map emd_16207_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 192 192 192 0 0 0 192 192 192 259.2 259.2 259.2 90.0 90.0 90.0 X Y Z -0.73749197 1.4634297 0.016866146 0.08734687 1.35 1.35 1.35 AUTHOR HIV-1 Capsid subtomogram average from 5 tomograms using relion4 tomo software. Half2 map