2024-07-24 REL PDBe PDBe PDBe 2022-11-21 2022-12-28 2022-12-28 2024-07-24 Wellcome Trust 202231/Z/16/Z United Kingdom Medical Research Council (MRC, United Kingdom) MC_UP_1201/31 United Kingdom In situ structure of the Caulobacter crescentus S-layer von Kuegelgen A Bharat T RsaA S-layer sub-tomogram averaging Caulobacter, STRUCTURAL PROTEIN Zivanov J Oton J Ke Z von Kugelgen A Pyle E Qu K Morado D Castano-Diez D Zanetti G Bharat TAM Briggs JAG Scheres SHW A Bayesian approach to single-particle electron cryo-tomography in RELION-4.0. Elife US 11 2022 36468689 doi:10.7554/eLife.83724 2050-084X Zivanov J Oton J Ke Z von Kuegelgen A Pyle E Qu K Morado D Castano-Diez D Zanetti G Bharat TAM Briggs JAG Scheres SHW A Bayesian approach to single-particle electron cryo-tomography in RELION-4.0 BioRxiv US 2022 doi:10.1101/2022.02.28.482229 2692-8205 8bqe FULLOVERLAP Caulobacter crescentus S-layer Caulobacter crescentus S-layer 0 1
Caulobacter crescentus S-layer
Caulobacter vibrioides NA1000 YB2811 extra-cellular S-layer protein rsaA Caulobacter vibrioides NA1000 NA1000 / CB15N 0.098153906
In-situ S-layer
6 Caulobacter vibrioides NA1000 LEVO MAYTTAQLVTAYTNANLGKAPDAATTLTLDAYATQTQTGGLSDAAALTNTLKLVNSTTAVAIQTYQFFTGVAPSAAGLDF LVDSTTNTNDLNDAYYSKFAQENRFINFSINLATGAGAGATAFAAAYTGVSYAQTVATAYDKIIGNAVATAAGVDVAAAV AFLSRQANIDYLTAFVRANTPFTAAADIDLAVKAALIGTILNAATVSGIGGYATATAAMINDLSDGALSTDNAAGVNLFT AYPSSGVSGSTLSLTTGTDTLTGTANNDTFVAGEVAGAATLTVGDTLSGGAGTDVLNWVQAAAVTALPTGVTISGIETMN VTSGAAITLNTSSGVTGLTALNTNTSGAAQTVTAGAGQNLTATTAAQAANNVAVDGGANVTVASTGVTSGTTTVGANSAA SGTVSVSVANSSTTTTGAIAVTGGTAVTVAQTAGNAVNTTLTQADVTVTGNSSTTAVTVTQTAAATAGATVAGRVNGAVT ITDSAAASATTAGKIATVTLGSFGAATIDSSALTTVNLSGTGTSLGIGRGALTATPTANTLTLNVNGLTTTGAITDSEAA ADDGFTTINIAGSTASSTIASLVAADATTLNISGDARVTITSHTAAALTGITVTNSVGATLGAELATGLVFTGGAGADSI LLGATTKAIVMGAGDDTVTVSSATLGAGGSVNGGDGTDVLVANVNGSSFSADPAFGGFETLRVAGAAAQGSHNANGFTAL QLGATAGATTFTNVAVNVGLTVLAAPTGTTTVTLANATGTSDVFNLTLSSSAALAAGTVALAGVETVNIAATDTNTTAHV DTLTLQATSAKSIVVTGNAGLNLTNTGNTAVTSFDASAVTGTGSAVTFVSANTTVGEVVTIRGGAGADSLTGSATANDTI IGGAGADTLVYTGGTDTFTGGTGADIFDINAIGTSTAFVTITDAAVGDKLDLVGISTNGAIADGAFGAAVTLGAAATLAQ YLDAAAAGDGSGTSVAKWFQFGGDTYVVVDSSAGATFVSGADAVIKLTGLVTLTTSAFATEVLTLA A0A0H3C8J1 CALCIUM ION 4.0078e-05 18 CA subtomogramAveraging cell 7.0
PYE medium
 Quantifoil R2/2 COPPER/RHODIUM 200 CARBON HOLEY ARRAY GLOW DISCHARGE AIR
15 mA
 ETHANE 100 283.15 FEI VITROBOT MARK IV
1.5 s blot.
Caulobacter crescentus stalk
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 2.0 2.0 5.0 5.0 105000.0 105000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 70.0 70.0 not used not used GIF Quantum LS 20 GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 1-10 1 1.0 3.4
Dose symmetric tilt scheme (Hagen et al, JSB)
 1 3 C6 FOURIER SPACE 3.5 FSC 0.143 CUT-OFF RELION 42990 110 51866 EMDF EMD-10388 RELION 4.0.0
RELION subtomogram averaging
 6 8645.0 RELION 4.0.0 MAXIMUM LIKELIHOOD RELION 4.0.0
RELION 4.0.0
 emd_16183.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 160 160 160 0 0 0 160 160 160 216.0 216.0 216.0 90.0 90.0 90.0 X Y Z -1.4492271 2.1447482 0.000000000001838 0.109431066 1.35 1.35 1.35 0.54716 AUTHOR PostProcessed map with B-factor sharpening RIGID BODY FIT REAL emd_16183_msk_1.map emd_16183_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 160 160 160 0 0 0 160 160 160 216.0 216.0 216.0 90.0 90.0 90.0 X Y Z -0.4792802 0.90191203 0.000000000000177 0.057727545 1.35 1.35 1.35 AUTHOR Half map 1 emd_16183_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 160 160 160 0 0 0 160 160 160 216.0 216.0 216.0 90.0 90.0 90.0 X Y Z -0.4726074 0.9492608 0.000000000001251 0.05764967 1.35 1.35 1.35 AUTHOR Half map 2