<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1615" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2009-04-23</deposition>
         <header_release>2009-04-28</header_release>
         <map_release>2010-09-10</map_release>
         <update>2013-12-11</update>
      </key_dates>
      <title>Three-dimensional structure of YidC bound to the translating ribosome</title>
      <authors_list>
         <author>Kohler R</author>
         <author>Boehringer D</author>
         <author>Greber B</author>
         <author>Bingel-Erlenmeyer R</author>
         <author>Collinson I</author>
         <author>Schaffitzel C</author>
         <author>Ban N</author>
      </authors_list>
      <keywords>membrane protein insertion, ribosome, translation</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Kohler R</author>
               <author order="2">Boehringer D</author>
               <author order="3">Greber B</author>
               <author order="4">Bingel-Erlenmeyer R</author>
               <author order="5">Collinson I</author>
               <author order="6">Schaffitzel C</author>
               <author order="7">Ban N</author>
               <title>YidC and Oxa1 form dimeric insertion pores on the translating ribosome.</title>
               <journal>MOLECULAR CELL</journal>
               <volume>34</volume>
               <first_page>344</first_page>
               <last_page>353</last_page>
               <year>2009</year>
               <external_references type="PUBMED">19450532</external_references>
               <external_references type="DOI">doi:10.1016/j.molcel.2009.04.019</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>YidC bound to a translating ribosome</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>YidC bound to a translating ribosome</name>
            <number_unique_components>2</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">2.6</experimental>
               <theoretical units="MDa">2.6</theoretical>
            </molecular_weight>
         </sample_supramolecule>
         <complex_supramolecule supramolecule_id="1">
            <name synonym="Translating ribosome">Ribosome nascent chain complex</name>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <natural_source database="NCBI">
               <organism ncbi="562">Escherichia coli</organism>
            </natural_source>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <molecular_weight>
               <experimental units="MDa">2.6</experimental>
               <theoretical units="MDa">2.6</theoretical>
            </molecular_weight>
            <ribosome-details>ribosome-prokaryote: ALL</ribosome-details>
         </complex_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="Membrane protein insertase">YidC</name>
            <natural_source database="NCBI">
               <organism ncbi="83333">Escherichia coli K-12</organism>
               <cellular_location>Membrane</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.062</experimental>
               <theoretical units="MDa">0.062</theoretical>
            </molecular_weight>
            <number_of_copies>2</number_of_copies>
            <oligomeric_state>Dimer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
               <recombinant_plasmid>peT24a</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               <external_references type="GO">GO:0051205</external_references>
               <external_references type="INTERPRO">IPR013308</external_references>
            </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <grid>
                  <details>200 mesh copper</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <instrument>HOMEMADE PLUNGER</instrument>
                  <details>Vitrification instrument: Plunger</details>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TECNAI 20</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_defocus_min units="&#181;m">1.0</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">4.0</nominal_defocus_max>
               <nominal_magnification>50000.0</nominal_magnification>
               <calibrated_magnification>50000.0</calibrated_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>NIKON SUPER COOLSCAN 9000</scanner>
                        <sampling_interval units="&#181;m">12.7</sampling_interval>
                     </digitization_details>
                     <average_electron_dose_per_image units="e/&#8491;^2">15</average_electron_dose_per_image>
                     <bits_per_pixel>16.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Eucentric</specimen_holder>
               <tilt_angle_min>0</tilt_angle_min>
               <tilt_angle_max>0</tilt_angle_max>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>Each image</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">14.4</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>Imagic-5 Spider</name>
                  </software>
               </software_list>
               <number_images_used>24395</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="4922">
      <file>emd_1615.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>108</col>
         <row>108</row>
         <sec>108</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>108</x>
         <y>108</y>
         <z>108</z>
      </spacing>
      <cell>
         <a units="&#8491;">406.08</a>
         <b units="&#8491;">406.08</b>
         <c units="&#8491;">406.08</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-191.379999999999995</minimum>
         <maximum>342.406999999999982</maximum>
         <average>2.54968</average>
         <std>27.297599999999999</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">3.76</x>
         <y units="&#8491;">3.76</y>
         <z units="&#8491;">3.76</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>40.0</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>This map shows YidC bound to the tunnel exit region of an ribosome nascent chain complex</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1615::::</details>
   </map>
</emd>