<emd emdb_id="EMD-1604" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2009-02-26</deposition>
            <header_release>2009-03-09</header_release>
            <map_release>2009-04-01</map_release>
            <update>2013-03-13</update>
        </key_dates>
        <title>9 Angstrom Structure of an AMPPNP Microtubule-Kinesin5 Complex</title>
        <authors_list>
            <author>Bodey AJ</author>
            <author>Kikkawa M</author>
            <author>Moores CA</author>
        </authors_list>
        <keywords>microtubule,tubulin,kinesin,kinesin-5,KLP61F,Eg5,mitosis</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Bodey AJ</author>
                    <author order="2">Kikkawa M</author>
                    <author order="3">Moores CA</author>
                    <title>Nine-Angstrom Structure of a Microtubule-Bound Mitotic Motor</title>
                    <journal>J.MOL.BIOL.</journal>
                    <volume>388</volume>
                    <first_page>218</first_page>
                    <last_page>224</last_page>
                    <year>2009</year>
                    <external_references type="PUBMED">19285086</external_references>
                    <external_references type="DOI">doi:10.1016/j.jmb.2009.03.008</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>2wbe</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>Microtubule-KLP61F complex with AMPPNP</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>Microtubule-KLP61F complex with AMPPNP</name>
                <number_unique_components>2</number_unique_components>
            </sample_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name synonym="Microtubule">Microtubule</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                    <synonym_organism>cattle</synonym_organism>
                    <tissue>Brain</tissue>
                </natural_source>
                <recombinant_exp_flag>false</recombinant_exp_flag>
                <recombinant_expression database="NCBI" />
                <sequence />
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name synonym="KLP61F">KLP61F</name>
                <natural_source database="NCBI">
                    <organism ncbi="7227">Drosophila melanogaster</organism>
                    <synonym_organism>Fruit fly</synonym_organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.042</theoretical>
                </molecular_weight>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                    <recombinant_plasmid>pET-15b-TEV</recombinant_plasmid>
                </recombinant_expression>
                <sequence />
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>helical</method>
            <aggregation_state>filament</aggregation_state>
            <specimen_preparation_list>
                <helical_preparation preparation_id="1">
                    <buffer>
                        <ph>6.8</ph>
                        <details>80mM PIPES, 150mM NaCl, 7mM MgCl2, 1mM EGTA, 1mM beta-mercaptoethanol</details>
                    </buffer>
                    <grid>
                        <details>Quantifoil grid</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <instrument>HOMEMADE PLUNGER</instrument>
                        <details>Vitrification instrument: Home made</details>
                        <method>Blot for 2-3 seconds before plunging</method>
                    </vitrification>
                </helical_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <helical_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI F20</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <nominal_cs units="mm">2.0</nominal_cs>
                    <nominal_defocus_min units="&#181;m">1.08</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">3.94</nominal_defocus_max>
                    <nominal_magnification>50000.0</nominal_magnification>
                    <calibrated_magnification>50000.0</calibrated_magnification>
                    <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
                    <alignment_procedure>
                        <legacy>
                            <astigmatism>Astigmatism corrected at 150,000 times magnification</astigmatism>
                        </legacy>
                    </alignment_procedure>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                            <digitization_details>
                                <scanner>ZEISS SCAI</scanner>
                                <sampling_interval units="&#181;m">7.0</sampling_interval>
                            </digitization_details>
                            <number_real_images>24</number_real_images>
                            <average_electron_dose_per_image units="e/&#8491;^2">10</average_electron_dose_per_image>
                            <bits_per_pixel>12.</bits_per_pixel>
                        </image_recording>
                    </image_recording_list>
                    <specimen_holder>Single tilt cryo</specimen_holder>
                </helical_microscopy>
            </microscopy_list>
            <helical_processing image_processing_id="1">
                <final_reconstruction>
                    <algorithm>OTHER</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">9.4</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>Ruby-Helix</name>
                        </software>
                    </software_list>
                </final_reconstruction>
                <ctf_correction>
                    <details>Phase flipping, Wiener</details>
                </ctf_correction>
            </helical_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="12778">
        <file>emd_1604.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>151</col>
            <row>95</row>
            <sec>228</sec>
        </dimensions>
        <origin>
            <col>-75</col>
            <row>-47</row>
            <sec>-114</sec>
        </origin>
        <spacing>
            <x>95</x>
            <y>151</y>
            <z>228</z>
        </spacing>
        <cell>
            <a units="&#8491;">211.4</a>
            <b units="&#8491;">133</b>
            <c units="&#8491;">319.2</c>
            <alpha units="deg">90</alpha>
            <beta units="deg">90</beta>
            <gamma units="deg">90</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-3.80928</minimum>
            <maximum>5.50361</maximum>
            <average>-0.00000000110627</average>
            <std>1.0</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">1.4</x>
            <y units="&#8491;">1.4</y>
            <z units="&#8491;">1.4</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.5</level>
            </contour>
        </contour_list>
        <annotation_details>Microtubule-kinesin5 complex</annotation_details>
        <details>::::EMDATABANK.org::::EMD-1604::::</details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <initial_model>
                    <access_code>1mkj</access_code>
                </initial_model>
                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
                <software_list>
                    <software>
                        <name>UCSF Chimera</name>
                    </software>
                </software_list>
                <details>Protocol: Rigid body. KLP61F, alpha-tubulin and beta-tubulin were all fitted separately</details>
                <refinement_space>REAL</refinement_space>
            </modelling>
            <modelling>
                <initial_model>
                    <access_code>1t5c</access_code>
                </initial_model>
                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
                <software_list>
                    <software>
                        <name>UCSF Chimera</name>
                    </software>
                </software_list>
                <details>Protocol: Rigid body. KLP61F, alpha-tubulin and beta-tubulin were all fitted separately</details>
                <refinement_space>REAL</refinement_space>
            </modelling>
            <modelling>
                <initial_model>
                    <access_code>2kin</access_code>
                </initial_model>
                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
                <software_list>
                    <software>
                        <name>UCSF Chimera</name>
                    </software>
                </software_list>
                <details>Protocol: Rigid body. KLP61F, alpha-tubulin and beta-tubulin were all fitted separately</details>
                <refinement_space>REAL</refinement_space>
            </modelling>
        </modelling_list>
    </interpretation>
</emd>