2024-10-23 REL PDBe PDBe PDBe 2022-10-21 2023-01-11 2023-01-11 2024-10-23 Max Planck Society Germany Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (CI membrane tip) Klusch N Kuehlbrandt W Plant, Mitochondria, Complex, MEMBRANE PROTEIN Klusch N Dreimann M Senkler J Rugen N Kuhlbrandt W Braun HP Cryo-EM structure of the respiratory I + III 2 supercomplex from Arabidopsis thaliana at 2 angstrom resolution. Nat.Plants UK 9 142 156 2023 36585502 doi:10.1038/s41477-022-01308-6 2055-0278 8beh FULLOVERLAP Mitochondrial Arabidopsis thaliana I+III2 supercomplex (CI membrane tip) Mitochondrial Arabidopsis thaliana I+III2 supercomplex (CI membrane tip) 0 1 2 3 4 5 6 7 8 9 10 11 12 13 Arabidopsis thaliana NADH-ubiquinone oxidoreductase chain 5 Arabidopsis thaliana 0.07449797699999999 1 LEVO MYLLIVFLPLLGSSVAGFFGRFLGSEGSAIMTTTCVSFSSILSLIAFYEVALGASACYLRIAPWISSEMFDASWGFLFDS LTVVMLIVVTFISSLVHLYSISYMSEDPHSPRFMCYLSIFTFFMLMLVTGDNFLQLFLGWEGVGLASYLLIHFWFTRLQA DKAAIKAMLVNRVGDFGLALGILGCFTLFQTVDFSTIFACASVPRNSWIFCNMRLNAISLICILLFIGAVGKSAQIGLHT WLPDAMEGPTPVSALIHAATMVTAGVFMIARCSPLFEYSPTALIVITFAGAMTSFLAATTGILQNDLKRVIAYSTCSQLG YMIFACGISNYSVSVFHLMNHAFFKALLFLSAGSVIHAMSDEQDMRKMGGLASSFPLTYAMMLIGSLSLIGFPFLTGFYS KDVILELAYTKYTISGNFAFWLGSVSVLFTSYYSFRLLFLTFLVPTNSFGRDISRCHDAPIPMAIPLILLALGSLFVGYL AKDMMIGLGTNFWANSLLVLPKNEILAESEFAAPTIIKLIPILFSTLGAFVAYNVNLVADQFQRAFQTSTFCNRLYSFFN KRWFFDQVLNDFLVRSFLRFGYEVSFEALDKGAIEILGPYGISYTFRRLAERISQLQSGFVYHYAFAMLLGLTLFVTFFC MWDSLSSWVDNRLSFILIVSSFYTKSSQE P29388 7.1.1.2 NADH-ubiquinone oxidoreductase chain 4 Arabidopsis thaliana 0.055995663999999994 1 LEVO MLEHFCECYFNLSGLILCPVLGSIILLFIPNSRIRLIRLIGLCASLITFLYSLVLWIQFDSSTAKFQFVESLRWLPYENI NFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAVFCMLDLLLFYVFFESVLIPMFIIIGVW GSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGTTDLQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEA HVEAPTAGSVILAGILLKFGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVT IGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFSTIFFFFTLANMSLPGTSSFIGE FLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNLKPDFLHKFSDLNGREVFIFIPFLVGLVWMGVYPKVFLDC MHTSVSNLVQHGKFH P93313 7.1.1.2 Acyl carrier protein 1, mitochondrial Arabidopsis thaliana 0.013735628 1 LEVO MALRNAILRHLRVPVQTLGLNQSKIGFLGTIRSFSSHDDHLSREAVVDRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSL DTVEIVMAIEEEFKLEIPDKEADKIDSCSLAIEYVYNHPMSS P53665 Transmembrane protein Arabidopsis thaliana 0.009876422 1 LEVO MGGGDHGHGAEGGDFRAKVWSMTGGPNCRPKHWRRNTAIAMFGVFLVCIPIAKLSAKLEQRPHMPVRPIPSQIWCKNFGT KDDYEKEH Q8VZT9 ESSS subunit of NADH:ubiquinone oxidoreductase (Complex I) protein Arabidopsis thaliana 0.012648286 1 LEVO MPSTQSLTVAAKTLRNRIFSRSGSTSAGPSRWATPGHEERPKGYFMNRTPPAPGQSRKWEDWELPCYITSFLTIVILGVG LNAKPDLSIETWAHQKALERLEMEKLATAGDSSD Q9SLC8 At1g67350 Arabidopsis thaliana 0.011808244 1 LEVO MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHNAQLRWDPQISQVAGRRDPYD DLLEDNYTPPSSSSSSSD Q9FYF8 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 Arabidopsis thaliana 0.00758259 1 LEVO MGGGGHGGGITYKGVTVHTPKTWHTVTGKGLCAVMWFWILYRAKQDGPVVMGWRHPWDGHGDHGHGDHH Q8LDK3 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-A Arabidopsis thaliana 0.008064313 1 LEVO MAKPLGTTGEFFRRRDEWRKHPMLSNQMRHALPGIGIGVGAFCVYLVGEQIYSKLMAPSSQSSHQKQPAPSH O64725 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial Arabidopsis thaliana 0.013225222 1 LEVO MAGRLSGVASRIMGGNGVVARSVGSSLRQRAGMGLPVGKHIVPDKPLSVNDELMWDNGTAFPEPCIDRIADTVGKYEALA WLSGGLGFFVGLGLLAVLNDKASKVPFTPRVYPYDNLRVELGGEP Q9FGK0 AT2G31490 protein Arabidopsis thaliana 0.008305539 1 LEVO MGGGMETNKNKFIEDWGSARENLEHNFRWTRRNFALIGIFGIALPIIVYKGIVKDFHMQDEDAGRPHRKFL Q9SIQ8 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 Arabidopsis thaliana 0.013638334999999998 1 LEVO MSGVSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVEDVDRIDKLIAHGEAEYNKWRH PDPYIVPWAPGGSKFCRNPTPPAGIEIVYNYGLEDNP Q945M1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 Arabidopsis thaliana 0.011757832 1 LEVO MEVPGSSKKMIATQEEMSAAKIALGSRDMCAHLLIPLNKCRQAEFYLPWKCEDERHVYEKCEYELVMERMLAMKKIREEE ALAKQNKLQGNAAVPLIPKTANA Q9SKC9 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B Arabidopsis thaliana 0.012462276 1 LEVO MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIQIEKAKILREKVKWCYRVEGVNHYQKCRHLVQQYLDS TRGVGWGKDHRPISLHGPKPEAVEAE Q94C12 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE 0.000704998 3 3PH (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE 0.000751023 1 PGT PHOSPHATIDYLETHANOLAMINE 0.0007340389999999999 1 PTY (7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE 0.0007631 1 PC7 S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate 0.000540651 1 8Q1 water 1.8015e-05 617 HOH singleParticle particle 0.18 7.4 Quantifoil R1.2/1.3 COPPER 400 CARBON CONTINUOUS GRAPHENE CONTINUOUS GLOW DISCHARGE ETHANE 70 283.15 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.5 1.5 215000.0 FEI FALCON IV (4k x 4k) 50.0 1 1215138 EMD-11878 C1 2.29 FSC 0.143 CUT-OFF RELION 3.1.3 213993 MAXIMUM LIKELIHOOD RELION 3.1.3 emd_16003.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 245 244 221 283 313 366 221 244 245 126.633 139.812 140.38501 90.0 90.0 90.0 Z Y X -3.8083503 5.5876684 0.00000000000171 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