2024-07-24 REL PDBe PDBe PDBe 2022-10-21 2023-01-11 2023-01-11 2024-07-24 Max Planck Society Germany Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (CI peripheral tip) Klusch N Kuehlbrandt W Plant, Mitochondria, Comple., MEMBRANE PROTEIN Klusch N Dreimann M Senkler J Rugen N Kuhlbrandt W Braun HP Cryo-EM structure of the respiratory I + III 2 supercomplex from Arabidopsis thaliana at 2 angstrom resolution. Nat.Plants UK 9 142 156 2023 36585502 doi:10.1038/s41477-022-01308-6 2055-0278 8bed FULLOVERLAP Mitochondrial Arabidopsis thaliana I+III2 supercomplex (CI peripheral tip) Mitochondrial Arabidopsis thaliana I+III2 supercomplex (CI peripheral tip) 0 1 2 3 4 5 6 7 8 Arabidopsis thaliana NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial Arabidopsis thaliana 0.028423607 1 LEVO MLARLAAKRLLEIRQVFRQPTSQVTRSLSTALNYHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLA QQQNGGWLPVSAMNAVAKVIEVAPIRVYEVATFYSMFNRAKVGKYHLLVCGTTPCMIRGSRDIESALLDHLGVKRGEVTK DGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGTQNPKRIKCGPEGGNKTL LGEPKPPQFRDLDAC O22769 7.1.1.2 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial Arabidopsis thaliana 0.053522417999999995 1 LEVO MAPVRGILGLQRAVSIWKESNRLTPALRSFSTQAASTSTTPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAM KRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHK LLEGCLIAGVGMRASAAYIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLESLE GKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPLK ELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICEDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHE SCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRERAERE LLQAAA Q9FNN5 7.1.1.2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial Arabidopsis thaliana 0.081619367 1 LEVO MGLGILASRTIRPASRLLQSQTSNFFLRTIVSKPELQSPESAAVSEPEPPTQILPPRNPVGGARVHFSNPEDAIEVFVDG YAVKVPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPIAKKAREGVME FLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFASEVAGVQDLGIL GRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKATETIDVSDAVGSNIRVDSRGPEVMRIIPRLN EDINEEWISDKTRFCYDGLKRQRLSDPMIRDSDGRFKAVSWRDALAVVGDIIHQVKPDEIVGVAGQLSDAESMMVLKDFV NRMGSDNVWCEGTAAGVDADLRYSYLMNTSISGLENADLFLLIGTQPRVEAAMVNARICKTVRASNAKVGYVGPPAEFNY DCKHLGTGPDTLKEIAEGRHPFCTALKNAKNPAIIVGAGLFNRTDKNAILSSVESIAQANNVVRPDWNGLNFLLQYAAQA AALDLGLIQQSAKALESAKFVYLMGADDVNVDKIPKDAFVVYQGHHGDKAVYRANVILPASAFTEKEGTYENTEGFTQQT VPAVPTVGDARDDWKIVRALSEVSGVKLPYNSIEGVRSRIKSVAPNLVHTDEREPAAFGPSLKPECKEAMSTTPFQTVVE NFYMTNSITRASKIMAQCSAVLLKKPFV Q9FGI6 7.1.1.2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial Arabidopsis thaliana 0.025536800999999998 1 LEVO MASILARRSLNTLRARHLVLSGQALQGSHLSRLQSRGISYGSNKDDEEAEQLSKEISKDWNTVFERSINTLFLTEMVRGL SLTLKYFFDPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMT KCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR Q42599 7.1.1.2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial Arabidopsis thaliana 0.017160445 1 LEVO MALCATTQRTIRIAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGSGKLGKWKINFVS TLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKVKKPNTPLLKVKSYSDNFKWKGNPQPEN Q9FJW4 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial Arabidopsis thaliana 0.012251121999999998 1 LEVO MASNLLKALIRSQILPSSRRNFSVATTQLGIPTDDLVGNHTAKWMQDRSKKSPMELISEVPPIKVDGRIVACEGDTNPAL GHPIEFICLDLNEPAICKYCGLRYVQDHHH Q9M9M6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 Arabidopsis thaliana 0.010865765 1 LEVO MAWRGSISKSMKELRILLCQSSPASAPTRTFVEKNYKDLKSLNPKLPILIRECSGVQPQMWARYDMGVERCVNLDGLTEP QILKALENLVKSGATKA Q9FIJ2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 Arabidopsis thaliana 0.015102261 1 LEVO MAAPFALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIRNNAHITDPKVIDLLIF KGMEELTDIVDHAKQRHHIIGQYVVGEGLVQNTGNKDQGKTDFLKNFYTSNYF Q9LHI0 FE2/S2 (INORGANIC) CLUSTER 0.00017581999999999998 2 FES FLAVIN MONONUCLEOTIDE 0.00045634399999999997 1 FMN IRON/SULFUR CLUSTER 0.00035163999999999996 3 SF4 ZINC ION 6.5409e-05 1 ZN water 1.8015e-05 646 HOH singleParticle particle 0.18 7.4 Quantifoil R1.2/1.3 COPPER 400 CARBON CONTINUOUS GRAPHENE CONTINUOUS GLOW DISCHARGE ETHANE 70 283.15 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.5 1.5 215000.0 FEI FALCON IV (4k x 4k) 50.0 1 1215138 EMD-11878 C1 2.03 FSC 0.143 CUT-OFF RELION 3.1.3 213993 MAXIMUM LIKELIHOOD RELION 3.1.3 emd_15998.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 204 255 184 350 91 188 184 255 204 105.432 146.115 116.892006 90.0 90.0 90.0 Z Y X -8.949057 14.342238999999999 0.000000000001256 0.43444473 0.573 0.573 0.573 0.8 AUTHOR Coot 0.9.5 REAL emd_15998_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 750 750 750 0 0 0 750 750 750 429.75 429.75 429.75 90.0 90.0 90.0 X Y Z -0.040028367 0.13711557 0.000019212814 0.00074382476 0.573 0.573 0.573 AUTHOR emd_15998_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 750 750 750 0 0 0 750 750 750 429.75 429.75 429.75 90.0 90.0 90.0 X Y Z -0.037800055 0.09499017 -0.000059440397 0.0030556498 0.573 0.573 0.573 AUTHOR emd_15998_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 750 750 750 0 0 0 750 750 750 429.75 429.75 429.75 90.0 90.0 90.0 X Y Z -0.03693604 0.09977295 -0.000059396763 0.0030500623 0.573 0.573 0.573 AUTHOR