2023-12-13 REL PDBe PDBe PDBe 2022-10-20 2023-03-08 2023-03-08 2023-12-13 German Research Foundation (DFG) SCHW 1851/1-2 Germany Cryo-EM structure of SARS-CoV-2 spike (HexaPro variant) in complex with nanobody W25 (map 1, two RBDs up) Lauer S Spahn CMT Schwefel D SARS-CoV-2, spike, S protein, HexaPro, nanobody, VIRAL PROTEIN Schwefel D Cryo-EM structure of SARS-CoV-2 spike (HexaPro variant) in complex with nanobody W25 To Be Published 0353 Severe acute respiratory syndrome coronavirus 2 spike protein in complex with nanobody W25 Severe acute respiratory syndrome coronavirus 2 spike protein in complex with nanobody W25 0 1 2 Severe acute respiratory syndrome coronavirus 2 0.14 SARS-CoV-2 spike protein Severe acute respiratory syndrome coronavirus 2 Homo sapiens LEVO MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHSAWSHPQFEK P0DTC2 Nanobody W25 Vicugna pacos Escherichia coli LEVO MKYLLPTAAA GLLLLAAQPA MAQVQLVESG GGLVQPGESL RLSCAASGSI FGIYAVHWFR MAPGKEREFT AGFGSHGSTN YAASVKGRFT MSRDNAKNTT YLQMNSLKPA DTAVYYCHAL IKNELGFLDY WGPGTQVTVS SAAAHHHHHH GAAEQKLISE EDLNGAA singleParticle particle 0.1 7.8 10.0 Tris-HCl Tris-(hydroxymethyl)-aminomethan -hydrochlorid 150.0 NaCl sodium chloride Quantifoil R1.2/1.3 COPPER 400 GLOW DISCHARGE ETHANE 99 277 FEI VITROBOT MARK IV
1s blotting time.
FEI POLARA 300 SPOT SCAN OTHER FIELD EMISSION GUN 300 2.0 0.5 2.5 31000.0 NITROGEN GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 1 2080 10.0 60.0 1 527691 1 5.92 FSC 0.143 CUT-OFF cryoSPARC 3.3.1 76384 MAXIMUM LIKELIHOOD RELION 3.0.7 MAXIMUM LIKELIHOOD cryoSPARC 3.3.1 2 cryoSPARC 3.3.1 emd_15994.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 375.0 375.0 375.0 90.0 90.0 90.0 X Y Z -1.4768201 2.9424536 0.000050533123 0.0608021 1.25 1.25 1.25 0.3 AUTHOR sharpened map emd_15994_msk_1.map emd_15994_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 375.0 375.0 375.0 90.0 90.0 90.0 X Y Z -0.43642354 1.379779 0.000050533108 0.042910248 1.25 1.25 1.25 AUTHOR unsharpened map emd_15994_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 375.0 375.0 375.0 90.0 90.0 90.0 X Y Z -0.71157664 1.7855122 0.0017529818 0.06853997 1.25 1.25 1.25 AUTHOR half map A emd_15994_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 375.0 375.0 375.0 90.0 90.0 90.0 X Y Z -0.6802382 1.6005362 0.0017589108 0.068867795 1.25 1.25 1.25 AUTHOR half map B