2024-07-24 REL PDBe PDBe PDBe 2022-10-18 2023-01-11 2023-01-11 2024-07-24 European Research Council (ERC) European Union Other government Italy IFTA complex in anterograde Intraflagellar transport trains (Chlamydomonas reinhardtii) Lacey SE Foster HE Pigino G Cilia, IFT, Intraflagellar, transport, PROTEIN TRANSPORT Lacey SE Foster HE Pigino G The molecular structure of IFT-A and IFT-B in anterograde intraflagellar transport trains. Nat.Struct.Mol.Biol. US 30 584 593 2023 36593313 doi:10.1038/s41594-022-00905-5 1545-9985 EMD-15977 other EM volume
Consensus map of IFTB from the same sample
 EMD-15978 other EM volume
Focussed refinement of the IFTB1 subcomplex from the same sample
 EMD-15979 other EM volume
Focussed refinement of the IFTB2 subcomplex from the same sample
 8bda FULLOVERLAP One IFTA repeat from anterograde intraflagellar transport trains within native Chlamydomonas reinhardtii cilia One IFTA repeat from anterograde intraflagellar transport trains within native Chlamydomonas reinhardtii cilia 0 1 2 3 4 5 Chlamydomonas reinhardtii Intraflagellar transport protein 121 Chlamydomonas reinhardtii 0.13626735899999998 1 LEVO MFIYLSKKIAIPNNVKLRCISWNTDQGWIACGGESGLLKVLRLDGTTSKDVKGKKEGGAPGGNLSLNQTLEGHNGAVICV CWNNAFQKLTTSDEFGLIIVWMLHKGMWFEEMINNRNKSVVKDMKWTSNGEKICIVYEDGAVIVGSVDGNRLWGKELGMD LALVEWSPDGRLLLFATPGGECHVYDGNGNGVAKVPLYCNEGYAGASKIIGVEWYDGVEGYAEPNCPVLAICLDNGRMQL MRYESDDNAVCIDTGIKPVKVKWNMNGTILAVAGFQMSSAVADGRELWMVQFYNHNGEHLRTLRVPGGGISGISWEGNGL RLALSVDSYVYFANVRPDYKWGYFCNTLVYAFNRPDRSEHCVMFWDTKNNDKYPKYVRKLVAIQAFGDFCVLATKGENPG EHILILCNAIGSPVDSKYIEVEPKYLAITNYHVIAANDEVVYVWQFRTSFSKVLSTDINAVKRKDVREKMFSVDDSNPAL SDRSPESFRNMTTQTTDPIACVTACDSVLMIGRASGVVNRYSLPHLTLDAQHVLRCRPQMLALNCNLSKMSIIDINGVLT FFDLTAKAPGGGANTMGEHLSFERKDAWDMRWADDNPELFAMMEKTRMYIFRGLDPEEPVTSSAYLCSFHDLEITAAFLD DIMQQPDQPDLEFMVMYETRSLRDTRELLKSASVDDAYAFVDSNSHPRLWRNLAEHALEQLDFTTADKAFVRCADYQGIQ FVKHLGKLDDKAKQRAEVAVYFKRFDEAEQLYMRMDRPDLAIDMRMRLGDWFKVERLIRESSGDDAQLLNAHNKIGQYYS DRHKWGKAAQYYAQAKNSEMLVECFYALEDFVALGRLMDALPDGSPLLANIGEKFQSVGLCNEGVTAFLKAGDTKRAIDC CVLLNQWDQAVQLAQAHNFPQIEQLLAKYANHLLEKEKVMDAIELYRKANHSMEAARLLQDLAKKCADQKVHPLRVKKLY VLAALEIEKFKKRTLDMAGPDKTAATLLGTGGTATMAATAAQTLAGLMTLESAVSGEAGVDSAWRGAEAYHFWLLAHRQL YAGNVDLAMRTALHLREYEDLLDPVEIYSFLALAAFYNQFFGQCSKAFIKLESMPSIPNDKRESFADLAMSIFLKHPPAD PRALRETREKKAPGGGAMAGNSLDALLEDLGGGREQVCVASGRIVRDGNVVRCKVCKHLSITHELHGAAVCPLCHAALPV SGGGAPGRGMSAKGGAMAQMYGAY A8JFR3 Intraflagellar transport protein 139 Chlamydomonas reinhardtii 0.152227688 1 LEVO MADRVLALVHYYAREGYFRHVQTVCNEVLKKRPGDGVLTFWRAYGLLMEGNTADAMRDLSSIQGNSDLELAVAAAQLLGH ESAKVPDHDAIIDLQAKLEIEERTASDQPCLHLASFYLYTKSKERARGLVERVLRNQPDMVPAQVLLGWIIISQQQDDEY DMLFDESELDDALSHFEQAVEHDHNDLQALLGKAKIMELKKQLGPCLDVLTEINVRFGWFVPALVEKTRMLMMLGDWEQV TETLQRVLAADQQNIMAQAWNCMISLTREGNNKQAAKQLQDLFSSMNRQEPKNAELFFRVARPFGRLACSDPTLLGITYL MADRAAQLRPEMAAYVVEAAAQKLMMDETTNATERFTQALQLDELNLEANAGALEAQIMAGELEEAAGQIMFLEDMFTNA AAAGGGKRKGRGTGDMDDDPDMADPSLGTSSDNPTLLYLKGLLAWKQGMPSEGLGLLERSIAALFSAAADFHGPSLELYA ALNPARITAVVRLLLQSIGGEPRAPTEAPSPLISKVTRALDLLNKQAPALQESALLHARALYLNGNLDGALRKAGEILRM NPEESSAHLLICSVYVAQDKPELAVSALDQAVSSNFAIRETPLYHVVQAKVLVANNKLDDAKRVLESAMNLPGVRTALTV QQRARLGRKVVEPTLHERATVYLLLADVLARQSKIPDAPEAKKYIQDAIREFEGTSEEVRVTVADCELAIARGDVEGALK KLRRIPKESPHYVKARMAMADIYLRHRKDKAAYIKCYMDLVDHTPDYDSYCMLGEAFMQIQEPEKAVRAFESALEFSPKD VDLITRCARALVTSHDYQRAIDYYTKAIANARGGAQHALQLELGNLLVRLRQYPAATAAINKALERNRDGLPATENLQLD VEAWSMLAKVHKGKLEMEGYSQAQSRALELQKQLLLKLRGELPEAVALQRERTAAICFDLAEQSKRARQFDRAMELYMEA LRHHDTHVPSMLAVAKLHLANGDTDACQAQCVTLLKHDPDNEEASIMLAELMFHKEHYDTAIYHFQQLLERSPNHYGALA QLILLLRRAGRLEDVPRYFALAEAGSPKAVMDPGYHYCKGIYNRYINNPREALKELNLARKDTRWGSQAILHMVEIYLNP DNDAVWEEKENADTPESRQAVATARSLLKQVRGADTTTQRYRVLESYAIMAGKDKNEIEASLNVLLDLANQDPNNVPVLL AMATGFMMLKQTPKARNQLKRVQKIQYKPDEAEEFERSWLLLADIHIQGGKYDLAQDLCQKCLKYNKSCAKAWEIMGQIM EREQAYKDAADHYENAWKHENQASAQVGFKLAFNYLKARRYVEAVDVCHKVIKAFPDYPKIRKEILEKARMGLKP A9XPA6 Intraflagellar transport particle protein 140 Chlamydomonas reinhardtii 0.157426641 1 LEVO MEIYYTTKISGRAGVIAGWSKAPGYPSLLAVALSPNAVGIYNEEGRPLDPNNEANIKNVRGTECAKIAWHPLLPLLAIGW KDGAISFWNAEERKLEEDSKIHRNTISSMTWTASGDRLITGDENGRISMWKTDRLMRPIHVVAYDEPGAVIRHTVVGLPE EMPDTNSQVVVAFYVADAQERAVVKWCNDQGYSGVVVEMSEGVHTLVHYPERDQLLVVGSSCTLNVLTRDEQLGTWVTAS KMKFATGTGEAATGLQVAWAGNHTLASASEKDNVVRMYNFDTEDNYVLNLEQDSGLVSRVVCLAYDDRYNLLAVGTTDGR VMMYKFNQPNLNLEPVLDFAKCWEMQPAFFVGNRALAMEWGPFPRLMVVACNDAINVCRKTMLSYKFRDGVAIMQVAVDR VVLENLEVEPQRPPGRLQLQDMQLLGLDLSKGLLLVWDGERAEVYKVTETNDIMPASQFETTSRCMAINNDSVYRAAENK VEVVNMAGTVKQTLMFDDNHGSPTSMDVARDYLAVVTSANIVRILKVAGREAKPHAGPAPLCPPELKDWKVMAMRANGNG NLVAALVVGPEPARAVRLVVWCGETNTHHVHDFTPEGRQPVQLMFDTVEPKLLVVQCTPVFTEANVDERPHGDAAHVVDC AIIFVDPDKGILLQEYQPIHTGGATACIGSCAPHLLTNKKSMVQPAPGSGAFQPFTSNVSKAIMTSFQGMQDSDDKTRRA LLDFSFNLATGNMDEAFRSVKAIKNPAVWENMAHMCIRNKRLDVAEHCLSNMEHARGARALREAKSIEEADARVATVAVH LGMIEDAKKLYIACERYDLLNQLYRACGQWDKALEVAEKNDRIHLKSTHYAYGQFMERQGDMEGARKHYEAAGCGLVEVP RMLFEAEKFTELQNYIQANDSRELILWWGKYLESLGEYAKALDCYRKAGDSLSMVRIHCFQRDWKAAEDEVTNSADNAAS FHLARQYEASGRIPEAIRYYTLAKRYSHGVRLAKTHELDSDLMNLALKSTPAVMIDTADYLFAKGQHEKAATLYMKGGKL SKAVEMCFQAQLFDVLQHITDDMTPEKSDPNLYNKCAEFFMGFGHNDKAVKMLIAAQQYGRALELCVEHDVSITEEMADS MTPDKNAAVSADERNNVICRIAKVAKRQGNFQLAAKKYTQAGDKVKAMKALLRGGDAEKIIFFAGVSRQKDIYLMAANYL QTLNWHSDPELMKHIISFYTKAAAWESLASFYEACAQIEVDEYRDYEKALQAMREAAKYVAKSKNDDRDARVGVINDRIA VAEQFVAARQLIGSNPQEALRVCDELLRAIPPNSQDLEAGIRIGDVYALMVEYWYEARNPNEAYKAIEAMRRRGIILSPY LDTRMVEDIYRSLGVALDMAEERRGPANLGLRESDAGAFVEEEVADEDD A0A2K3DGM1 Intraflagellar transport protein 144 Chlamydomonas reinhardtii 0.150972844 1 LEVO MKKLFGVGPDLLGDGKVLFEWSPKGNFLAAAGSKRKVNIFDRNGRLYDEVHFPPAEYPNPDGRACAAAQMQWDPAGEQLA ILPAGNTHVFIWLAGNKEVQKIESEFKTQEFSCMAWSRNGMYLGVATVKGNVMMYNARERKKTPLVGKHTKKIVAAAWNK DNIMALAGQDKTVTLTDGVTGDTIKTFHLKDVPMDLCVSDKKEDGYSRREENTYSLNINRKTLYIMQCTAEGDRPLELAF LDTYGPIMKHSWFGDGYILLGYKNGYVAVVSSHSREISEEVHSGKYLDTLTDVTYCASLGRVAMAGANCVRVLDANADYN EIKGDAVDLDANQAIEKVGWTKDGQVLTVGTHNGYMHSFLASLPMVYDFHGTRVLYLTSLLEMTLLDVSRRQTVARIELE NEPAFCGLGPSHAAVGMNNQAAFYSLGEKVGKVVQRREYLGTITAIKLNETQAAVLTGGHVVVHPISVEAGHAPDELDVV IPGPGQPANITCVALTPTFVITGSRTGTLSYYLSPDVTPVNEFRHDDGGIVRLFPQATGARLVFEDDKGALHLFNPVNDH VVAVPYTGRAETVMWDTSDTNVMVIGDGTALHSFLYVPVSLTGPQVQDLGKQAVPATHTPLTVCNGVVGCRLKSGAMDNV TLESHKMLQPGDAVARAAPAKRFAAALKLYKLRDAVECAKQLRQVESWRTLALAALDVLDIDTAINAYREIGDASMVLSL ERVRQHEDRNLLSAHIMVLLEKDYGQAQELFLRSSVPRAALEMRMDLKHWTDALKLAEQLDPDAIATICKEHGAMLEMTG EYSNAKSHYQQALDALAVSVGPAQPDLEAACKAGIARTTLQLGDLRQGRQLAMQLNSQTLFKECALILEGLQQLTEAAEM YERAGQFERAASIYIQTKNFAAAAPLMARISSSKLQLQFAKAKEAEGRWQEAAAAYEAAGDMDAVVRLCLERLSQPQRAY AIVRKTQSVEAANQLSRFCLQSQDFGGAVEFLLMAGQMDQAFDIAMGHNEMDTFARIVAASAKPVDYQRIAQYYESRGEY DKAADMWSKCDQAPRAVQLYLKVGTNPALEKAVQVVEQTRSHQLGVLVLDYVNEEKDGTTRDEFRFKLNIAMGQFAEAAR DALEMARFEQEEGNYRVAHDKLFGTVKQLEALNTKPPGELLRALMLLHSYTLVKSLIAINDHTTAARMLVRVARNISKFP KHIVPILTSTVIECHRANLKKTAFEYASMLMRPEYRDQVAVKYKKKIELMVRKPEKDPEELEEPLADCPFCNMPGPETEL QCISCQNILPFDLATGKRMVLSDWAECPGCKFPASASQFIRIISAEGRCPMCNDPVDLAHVRKVQDPLTKIKQQQAQQTN ASGGGAS A9XPA7 Intraflagellar transport protein 122 homolog Chlamydomonas reinhardtii 0.139382922 1 LEVO MRTVVAWQETPPEKDGVRNVCYDLCFKPDGSQVVAGIGNRVLVYDAADGDLLHALKGHKDSIYCVAYAQNGKRFASGGAD KTVIIWTSKAEGILKYTHNDAIQCLSYNPVTQQLASATGSDVGLWSPEQKSVAKHKVASRICSISWTADGAYLALGCFDG VISIRDKGGSEKHRIETGPSPVWSICWNPVETNVLCAGCFDGVLKFYMMSGQQKSKDRELAFDPLCVSYFSSGEYITVSG TDKTVHLYTRDGTYLTKIADRDSWVWAVRPRPKHNFVAVGTEGGGIAMFQLIFSTVHGLYQDRYAYRDQMTDVIIQHLIT EQKVRIKCKDYVKKIAVYKDKLAVQLQNKVVIYELANADDFDMHYQSATKIQQKLDCNLLVVTSHHVILCQEKKLQLYNF DGVKEREWVLDSVIRYIKVVGGPPRREGLLVGLKSGAILKIFVDNPFPIPLIKHTASVRCLDLSASRNKLAVVDENAKVL VYNLITKELVFEESNANSVAWNSEFEDMFCYSGNGMLSIKTGDFPLHQQKLQGFVVGFKGSKIFCLHYVSMQTIDVPQSA SMYRYLERKDFESAYRVACLGVTEADWKQLALEALQALNLEVARKAFIRIRDVRFVELVNRTEAGRKAGTSEQLLLAEIM AFQGRYQEAARLFTQAGAVDRAMEMFSDLRQFDEAKKWAEEFAASGRGDQRSVQELINRQAEWSEEVKNYDAAAEMYIKA KKYDRAIAILAKHQWWDKLIGVVRQLDKTDARCLGMCAGHFRRAPHFAYAKETLLKMDDTKGLITLYVEAEKWDDAFLLL HAHPECRQDVYLPYAKWLSNQDRFDEARLAYQEGGFPSLATRILEQLCANAVVETRYADAAFYYYQLAMEALKSIKNPPS NMAPSDRSALERFTELYDRAEVYYAYEVVHKSVHSPFRTTHPDTLFNASRFLLMRLLPPREVPLGVSVVNVVYVLAKQAV EAGAFKLARFAYNKLQTLVLPAAWQAEVDLASVVIRSKPFSDKEDLLPVCWRCSTTNPLLNTQGDYCINCGAPFIRSFVT FEHLPVVEFELEPGVDDEEAGRLLGEDAGMEAARRERKAERQAKAAEVGGNMLRLDQNEIDRMDDAFAAQMMVPNTTIRV DRAMLRRLKTAEVMVRTWPNPVIPKQYFRVMDQEVPLCCGPCGHFFEQDEFEMAALERGTAPFSRTTVRGEGLAPGEDAE DEGAGGNKLGGPLGSARGPIGGASKARMSVPFQQGRPLV H9CTG6 subtomogramAveraging helicalArray 7.0
TAP (Tris-Acetate-Phosphate) Media
 ETHANE
Chlamydomonas reinhardtii cells applied to quantifoil grids and plunge frozen; cilia project out from cell bodies and traverse holes in the carbon film.
 TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.5 5.0 FEI TITAN KRIOS AUTOGRID HOLDER FEI FALCON IV (4k x 4k) 2.6 1 C1 20.7 FSC 0.143 CUT-OFF RELION 3.1.3 Warp 3897 600 3897 MAXIMUM LIKELIHOOD emd_15980.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 727.2 727.2 727.2 90.0 90.0 90.0 X Y Z -1.2906342 2.1218252 -0.00015293066 0.09767275 6.06 6.06 6.06 0.5 AUTHOR FLEXIBLE FIT emd_15980_msk_1.map emd_15980_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 727.2 727.2 727.2 90.0 90.0 90.0 X Y Z -1.2943171 2.061339 -0.0003005684 0.0671091 6.06 6.06 6.06 AUTHOR Focussed refinement on a single IFTA repeat. Resolution 18.6A, bfactor -2000. emd_15980_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 727.2 727.2 727.2 90.0 90.0 90.0 X Y Z -1.2290848 2.289492 0.0000022841273 0.050902452 6.06 6.06 6.06 AUTHOR Focussed refinement on right half of a single IFTA repeat. Resolution 19A, bfactor -2000. emd_15980_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 727.2 727.2 727.2 90.0 90.0 90.0 X Y Z -1.2361001 2.1427927 -0.00014275666 0.051609445 6.06 6.06 6.06 AUTHOR Focussed refinement on left half of a single IFTA repeat. Resolution 19A, bfactor -2000. emd_15980_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 727.2 727.2 727.2 90.0 90.0 90.0 X Y Z -1.0787702 1.574755 0.008177968 0.17640194 6.06 6.06 6.06 AUTHOR emd_15980_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 120 120 120 0 0 0 120 120 120 727.2 727.2 727.2 90.0 90.0 90.0 X Y Z -1.1807777 1.4778686 0.008104117 0.17643133 6.06 6.06 6.06 AUTHOR