2024-11-13 REL PDBe PDBe PDBe 2022-10-18 2023-01-11 2023-01-11 2024-11-13 European Research Council (ERC) European Union Other government Italy IFTB1 subcomplex of anterograde intraflagellar transport trains (Chlamydomonas reinhardtii) Lacey SE Foster HE Pigino G Cilia, IFT, Intraflagellar, transport, PROTEIN TRANSPORT Lacey SE Foster HE Pigino G The molecular structure of IFT-A and IFT-B in anterograde intraflagellar transport trains. Nat.Struct.Mol.Biol. US 30 584 593 2023 36593313 doi:10.1038/s41594-022-00905-5 1545-9985 EMD-16014 other EM volume
consensus map
 EMD-15978 other EM volume
focused refinement
 EMD-15979 other EM volume
focused refinement
 8bd7 FULLOVERLAP Two IFTB repeats from anterograde intraflagellar transport trains within native Chlamydomonas reinhardtii cilia Two IFTB repeats from anterograde intraflagellar transport trains within native Chlamydomonas reinhardtii cilia 0 1 2 3 4 5 6 7 8 9 10 11 12 13 Chlamydomonas reinhardtii IFT88 Chlamydomonas reinhardtii 0.086418125 2 LEVO MSYGGTEEDDLYGGYDEQSNPLAGSGGAAFKALGADGAPPGTAMMGPPGTAMKSFVPGTAMRGGTAMQQDPSLARPMTSN RGAGFTSAPNKKFDPLNRSMGSTLGSSGGGAMLVARKGDTSPEEQARGMEKTVHELLEKSAADAAKNDINSALENAMEAK KNERKLCRFREQNNMADQINLELMYAVDFNLAHMYHMNKNYSEALNLYTAIVRNKNFPQSGWLRVNMGNIHFEQKKYPSA IKMYRMALDQISATAKEVRFKIMRNIGLSFVRMGQYPDALQSFATVMDNVPDHQTGYNLVMCNYALSDREGMKNAFIKLL KVSPPSEMDDDDDDDPMGDDDMQVMTMDDGLKDEMRKRNTIITRLIVKAAQLISEKVDRANGFEGGFMWCCEQLRDAGYT KLANEVELAKATRFMGQKQFDKAVGVFKDFEKKEPRVKARAATNLAFLYFLEGETDQADKYSEMALKSDRYNARAYVNKG CVLVERGDLEGARSLFNEAAGIDPYCVEAIYNLGLVSQRLNELPYALAAFKKLHNMVPDNVEVIHQIATTYDMMGDFKNA VKWFELLTSLVSNDPGVLARLGAIHARFDDEAKALHYYQESHRVYPVNMDVISWLGAYHVKSEVYEKAMPFFDLASKIQP QEVKWALMVASCYRRTNNLPAALGKYKQIHTQHPDNVECLRYLVHLCSELGRRAEAAEYMTKLKKAEKAAVPEATTAAAP AAAAAGSGMGGMGGLDDDIGSSAVSAQNRGKKMLVKEHMGGGGGKDNDDWGNEQLGDDLLPM A8JCJ2 Osm-6-like protein Chlamydomonas reinhardtii 0.050453184 2 LEVO MEEPGAEEVRILFSTAKGESHTHKAGFKQLFRRLRSTYRPDKVDKDDFTLDTLRSAHILVLGGPKEKFTAPEVDMLKKFV KNGGSILILMSEGGEEKAGTNINYFLEQFGMSVNNDAVVRTTHYKYLHPKEVLISDGILNRAVITGAGKSLNSNDDDEFR VSRGPQAFDGTGLEYVFPFGATLSVQKPAVPVLSSGKIAYPMNRPVGAVWAQPGYGRIAVLGSCAMFDDKWLDKEENSKI MDFFFKFLKPHSKIQLNDIDAEEPDVSDLKLLPDTASLADKLKGCLQEIDDVPRDWTSLFDDSLFKFDTGLIPEAVSLYE KLGVKKGQLNLIPPSFETPLPPLQPAVFPPTIREPPPPALELFDLDESFASETNRLASLTNKCHGEEDLEYYIMEAGHIL GLKLQENANAKHVLSEVFRRIAQYKMGSLGLGQTLDSMGQTLPAANQFGDQFEL Q946G4 IFT70 Chlamydomonas reinhardtii 0.074248609 2 LEVO MAFFQQPARPIAEGQYTQTIYTLIKEQKFAEAIQHLQYQLQNVPESRAALSLLGYCYYYTGQYDMASQMYEQLVTLYPSN EDYKLYYAQSLYKGGMYPEASKAVVKVEGHQKAVTTLLVACSYEQDDLTGCRRQLDKCAPEDPDTMVNTGCIMFKEGKFE AARQKFNDAVQALGYQPELLYNIALCYYKTKQFGPALKHLAEIIEKAVREHPELSVGSNTDGMEVRSVGNSQTLKETALI EAFNLKAAIEYTMKNVEAAKEALTDMPPRAEEELDPVTLHNSALINMDSDPTGGFKKLNFLLQSPPFPPETFANLLLLYC KPSHGFYDLAADVLAENPQYAGKLLSPDLYDYLQAAIGRYKSPEEAFRRFDELATRHVEQLRRLTKQIQDARIARDNDAI KRAINEYDEALEAYIPGLMAMASIYWDMELYSNVEKIFRQSAEFCSEHEVWKLNVAHTFFMQDNHYKEAIRYYEPVVKKN ADNLLGVTAIVLANLCVSYIMTSQNEEAEELMRKVEKEEERSSMQDPDKPCFHLCIINLVIGTLYCAKGNYEFGVSRIIK SLEPYDKKLETDTWYYAKRCFLALIENLAKHMIVLKDSSFTEIMAFLNEAEKHGKDIRVVFNEGKHQSRTIASEARMLKK MFLKLRD A8ITN7 Intraflagellar transport protein 46 Chlamydomonas reinhardtii 0.03797641 2 LEVO MDDSMDYPDRDGDDLDQFQGTARSQVVQNQPHDEEVNLSESESFAGADEPPAAPRDASLIESHDMDEGPAAPARTLSPTG YEAGKHAPGGIANSDEAPPGAYNAQEYKHLNVGEDVRELFSYIGRYKPQTVELDTRIKPFIPDYIPAVGGIDEFIKVPRP DTKPDYLGLKVLDEPAAKQSDPTVLTLQLRQLSKEAPGAKADMVGRLEHTDENKAKKIQQWIASINDIHKAKPAATVNYS KRMPEIEALMQEWPPEVETFLKTMHMPSGDVELDIKTYARLVCTLLDIPVYDDPVESLHVLFTLYLEFKNNPIFRQHMEM ENKLDGMSGGGGGMMGGGADVLGL A2T2X4 Intraflagellar transport protein 56 Chlamydomonas reinhardtii 0.063485508 2 LEVO MFYSKSRPQHAARTNVAQAAANEKPKVPELEEFLTKRDYLGAIALLSFRRHANRNDLKNLEWLAYCYFHYGEHDKALVIY KELLQHEDPDPMFFVYSAACLYYMGMYKEAEEQALQGPKCALQTRILFHSAQRQGNDDKLMAYHGQLTDSIEDQLTLASI HYQRSHFQEATDIYKRLLLEHRDYLRSTVVYVALCYCKLDYYDVSLEILGVYLSAFPDSAIAVNLKACNHFRMYNGKAAE AELKTLAELSGGQHLDHDLIRHNLVVFRGGENALQVLPPLSDIPPEARLNLVIHHLRHHEVGEAFGLIKDMEPSTPPEFI LKAVVHAMLGQVKGDPEHLKKAQQYYQLVGASASECDTIPGRQCMASCFFLLKQFEDVLVFLSSIKTYFLNDDDFNWNLG IAKAATGKYKEAEETLLQIANDKYRNEYTYTSWLARCYIMNGKARLAWERYLQLETNDESYQLLLLIANDCYKMGAFYFA CKAFDVLERLDPAPEYLEGKKGAACGAFQMIVAGKEPKDLLRDVISLLRGNNSADQCEPIVAVMRKWAKNNGVKL A8JA42 Intraflagellar transport protein 81 Chlamydomonas reinhardtii 0.077186484 2 LEVO MGDVSYIVDSLGLPPFSYQMSLLSFTEKGPQELLQLLSDVFSTISPKHQKVDVAKEVPDQTADRLIGFLKIIKYRPNVQD PLLFRQLVAAGDRETLYQILRWVVPQAQLLEKRAFVGYYLSFPDMPEEFNFDPDIMELKEEIKAMQQEFIELHKSSDAIK TLSKDTQALKNKIKSLEEEKERLGEKVERAKGAVDKLPDRSSYMEVCTNLRKQQDEEVNLSTAIQTQRALQEKAEASYHR AAARLRELQTSYQEGSAGKLLETLNEDVKNLRAQVNERYPKEVEKRQKRQAALSEALASGISTEMDLQRLQHQATALHNQ ITEIQERKVAQDKARQGDKAYLQLRQAQQMATVSARKKEELGAKQERLQEKKTALTAQLDKLNAEGGGSGAVFSEEEWRT KYESMKSKLPIYKKMKKELGDLEAEVFVLAHTEELLASQEGGLLEKVKRLEKQQGISGFTETAQHLEKVSEAKSQMDEEK GMTLIEISRTVEEINNAINQRKQQLAPQIKKLRSVRQDFAEFEAKYLEKKTAYDNVVATFEARTSALEGEVSGLKAEVSE NETKYHMLHCQLHITDQNIKKVTSGPAAERLRDKYEAKVKEAEDSTKALRDRQREIKDTHSTGLSQIDIMNDMLRLLQLK LNLARGIAVDMSQYGGGGGAAGGANGGMAGQTYDTGSANVLQL Q68RJ5 Intraflagellar transport protein 74 Chlamydomonas reinhardtii 0.071648398 2 LEVO MDRPSSRGALALGAGGLGKAPTGGAVQQPDRPMTGQRGAAPAGPMRAPAGASIIGAGPPGTAMRGGPGPAGGPPGTAYKR MGTASQRPGTGQQAAAAAAAARAGQQLQVENRPITNHGVSGMKTAAAGVGRQVLDKNYFMNELRQKRMEIAQVTSNMKSD LEALERKQAQYNSMDKRASDLSKEVKILQEALADYNTVLDKVGSQAPVYVIQQEFAALKDRNEQQRKRVDEVLTERLNLE SKAKQAESKMSEIQASMDQRLNSMPPSQRNEYTTLVAEQQQLQADSKRFEEVLDELDKALQASEGELARNPFKQRSLQLQ EQIRALTEKKYELTEEERQSKRSPEELRADLMAKIKRDNTEVEQMTQQIRELQDQIKKMEERVKSLGGATSGAAAAEEKA NREKFEELLAKERDLNNFMDGFPSRKAAKMQEKQQKEDGIVGVLEKMVKMQGIIGSNLPSQKKYKEMQDELEYKKMQLEN TQTTQERLKEELTMRRTELEKIDTLEDKIKLELTQLAERQEAMEKEMGEFGSVEDIQRKANAARERMEGLRSVLLKRKDL LRSIVAERGLKFQAKRAQLQDHNLQVQLEKMEAKLKNLSAGVFEMDEFIKAKESETNYRQLASNIAALVDDLNVHVKKAV V Q6RCE1 Intraflagellar transport protein 80 Chlamydomonas reinhardtii 0.085782609 2 LEVO MRLKVKQSSANVHSELTAAVGWNVWNELFTCSDDQTIHKWNMLGEPEQKVSTLDAYFTDMHWYPVSSKKTQAGGTDVFAV ACTDGSVKILSRTGRVEKSIEGHKGACISLRWSYDGTALATAGEDGSVKIWSRNGMLRSTLAQADSPVYSIVWAYDCDQL CYCTGSNVVIKSLSSNAKQNAWKAHDGVVLKVDWSPINHLIITGGEDCKYKVWDSFGRLLFQSGLFDYPVTSVAWAPSGE LFAVGGFNTLQLCDRMGWAYSKIHLNDTGSIMTLSWTADSTQLAGGGGSGGVVFGQVVDLALEDGKMQVTVVDDMRIVVN DILNENADELPEFRDRVIKVSLGYGYLIVATATQCHVYNTTNLGTPHIFDLKDTVTLLLQAERHFLLLDNSAGIQIYTYE GRQICNPRFQGLRTELLNAQMITLSNDTIAVLDQQASGTTVRFFDTAQGRPVGEPWQHTLEVKEIALSQAGTINDRQLIV IDRNRDLYLLPVMKRHVAKLAAMCDSARWHDSTAMLSAMVDQRLCVWYYPSEVYVDKDLLAKTRYTKSDSDFGKSAQIQL FAGNRCLVRRSDGVLVSAATSPYPAVLYDMIRKQQWDKATRLCRFIKDPTMWATLAAMAMAAKELNTAEVAFAAIDEVDK THFVRKVKQIPTEEGRNAELAVYRRKPEEGESILLQAGLVFRAIKLNIKLFNWERALDLATQHKQHQDTVLWYRQQFLKN AKLAESITRFMQMNESVVVDQAAVKKKIEEERIKESQRPGAKRYV A5Z0S9 Clusterin-associated protein 1 Chlamydomonas reinhardtii 0.049733468999999995 2 LEVO MSFRELRSFTEVMKALGYPRLISMENFRVPNFELVADCLYWLVHRYYPGVEIADDISTESDRVKFLQSVAQVMLTKARMK LNIKRLYAADGNAVKELLKLASLLYKATSKAGDMDDDAAEAIDVANSLKGFNPKEIKGLAAEIIKAGAGLYDALGQEPEL REHRARAVAGHVDTDFVERSIREAIAQVEDNIRSLENQMEDLERNEKTLDNKIEKKKQELERQEKRLSTLQSVRPAYMDE YERLQGELNGLYQSYLDRFRNLEFLENELEAYYQAEQEKMEAQERRLKKMQKRLKEEELRILRGEQEVDEANMNFDDDDM DLSEDGEHEEAEEGEDEDYGAGGQKATMRRDQFGGQGGGGGGGRQQGGGRNVMGNLDGDFDDEASIDEDDNTDGGEVSRQ GSQAGGMGGGGGYGGGGGYMNGGGMDDDENNLIQDDDEDDNDF A0A2K3CQB1 Intraflagellar transport protein 57 Chlamydomonas reinhardtii 0.051298413999999994 2 LEVO MSSKRGGRSSLAKAPEEAVNGEAFAPEASPPPPGDDGDAGGEDGGAPAPPPPPATKGGPVAVGRSLEIQTTPDVCMEMLA DKLKLLNYEADFCRKKKPYRKPLSRLYFAVPLANSSEQFFYFTSLATWLLGLAGVELPAPKEFDDPNLTCQNILGAVKKL GFAPPSYHPTKLTVGNGKEVVGVLDGLVDFVLERRHHKYSRPAYGNDGQPEEGVQLDDEAEAAAMEGADELAMPAQNQAD DDEEEEGVYVDPGRGDAAGPGTGASAAMDAEKAVLVSKVDPTLWKIELERVAPKLRITIAADSKDWRSHLDEAHQHKEVI SKAWPDSKTSLERLRADLNGTLEKLQTREKFLNEQAESLMQQYRAARTTFTDVQETYNRKTEAVADRNQEMHRIGETLEE VKAMMDEKGSNIADATPVARIKTAIKQLNKELHDMEVRIGVVSHTLLQLSLRNKRLLQAQAALSDEEED Q2XQY7 Intraflagellar transport particle protein IFT20 Chlamydomonas reinhardtii 0.015658664 2 LEVO MDAVDRGVYFDEDFHVRILDVDKYNASKSLQDNTNVFINNIQNMQGLVDKYVSAIDQQVERLEAEKLKAIGLRNRVAALS EERKRKQKEQERMLAEKQEELERLQMEEQSLIKVKGEQELMIQKLSDSSSGAAYV Q8LLV9 IFT54 Chlamydomonas reinhardtii 0.05443771499999999 2 LEVO MCDNWQATIDTLQGASPVFDKPKLSQKLLEKPPFRFLHDVVTAVQQATGFAPGLYQGDELDGKAIQEKDAKVAYLKKIIE VVSMVLGEQCPARPNKIVAGLEPENTNIFLQMLGRACQKGNGAKAVQKVLGGGGAEPAPAKEEAPPPEKKPEKKEKKEEK PAEKSRAEASPARKKAAEPEAEKKSSSKSSSRTKEEPPAKAPAKKKEEPAPEKPSKSKAAPAAEEAPPPPPPPAAEPPAR SASPGGEDPLNKSGSAAPKFQRPTSARKAPPRVPQPQQPTMLAGTGIRPGTATRRPNEPKPTDSKVTKPVAVFTDNAKDN SDDEVEVVHEQTPVLSGGANMTGEQGVLVKDILAAEKGLKKAGVDATADNADTSDQGSTGIILKRLGGKAAGAGAAAAGP RAHDPSSVRELVQKLCHSSTPLAKSMDYLQEDIENMRKEYKFWLTEKRMYQDELARELRLQGEAANVDAQLADLDGQIKQ ARDRIIGMKGQILRNDETLGKLLAMATAGR A8JBY2 Intraflagellar transport protein 172 Chlamydomonas reinhardtii 0.197851172 2 LEVO MQLRYFKSILPPADQYQKITSLTWAPNNSRLAAVSTDKVVYLFDENGEKRDKFKTKAAEANNPNTYIIRAMAFSPDSTKL AIAQSDNIVFIYRLVDPDTGAEKKSICNKFPQACAVTSLVWPKDRPNEVVFGLADGKVRLGMLKNNKSYTCYAHPENSYV VALASSLNGQNVISGHMDGAIWKFNFPAEEGGTPTSSQLVVHSCVPYSLGWGSCIAAAGNDNRVVFYDLNGREIRSFDYS NNDEVREFTTCAFNPSGDTVVFGTYNRFYMYTFNIQRNDWEEAGHKQIDNFYAVSAASWKPDGSKMTVGSMTGAVDMYDA CVKRHMYKGKFEFTYVSKSAVIVKTLKTGMRIVLKSVYGYEIEKINIYHDRYLIARTTYTLLMGDLDTCKLSEIPWDSDG SEKFHFENERVCMVHYAGELHIVEYGRNDVLGTCRTEHMNPYLISAVVQEARGIASESKKLAYLIDLQTVRIQDLMAPVG STLATVNHDTKVDWLELNQRGTHLLFRDKKRHLHLFSLSGQERTTLLNYCQYVQWVPGSDVIVAQSRNNLCVWYSVNKPD NVTMFPIKGEVVDIERHNHRTEVIVDEGINTVSYALDEALIYFGAALEDQDYERAVQTLEPLELTPETEAQWMQLAEQAL ATNQLVIAERCYAALGDIAKSRFLHKVVKKAQQAAKEFGGDGTDAWSVRAMMAQLNKQWPVSESLLLAQGKVDDAITLYQ DNHRWEDAIRVADSTHHANAAALKQQYLTWLLETGQEEQAGAVKEREGDYLAAIGLYLKGGLPGRAAQVVMSVHNVNWDP ALLDSILASLAKAGLYERAGELYEHMSRSSEAMQSYRRGHAYRKAIDLARREFPAEVIIIEEEWGDWLVTQKQMDAAINH FIESGATLKAIKAAIDCRQFAKAAGIIEVLDPREAMPYFRRIAQHYETTGALEEAERYYIRADMARDAVEMYSRAGKWEA AQRVARGYLTESEMRAFYRAKAAEFEAAHKLKEAEKAYLAAGGDDVDKAIAMYKRNKMYDQMIRLVTQYRKEKVPEAHTL IAQQLEVEGNLREAEKHFVEAKDWKSAVQMYRQVNQWEDALRVAKVYGGVNASKQVAYAWALTLGGDDGAQLLKKMGLLD HAIEYAVESGAFAQAFEMTRAGAKHKLPEVHLKYAMFLEDEGRFAEAEAEFISAGKPKEACDMYMHNQDWDAAMRIAERY DPTMVSEILVSQARVAVERKQWLPAEGLFIKAKRPEAALKMYRDARMWNDALRVAEQYLPTKVAEVQMELLSGQGAGGGS GGASADAVINKARGFERNNDYARAIETYLSLTAQDTSNQDQLEHCWGQAAQLAINYQRHRMKDVVNTVSERLQEIGRHQA AGELHESIDDAQGAIRAYCAGRLWDKARTLAGTNPTFSRYIEDQYNNYLLQNQQADELASRGGQHAQQAIEMYVARDEWA KVHELAAQQGPEVASNYALKHAERRFKQGDYAQAAQVFAQHGITAQPQYFELYKSIAQGVLHASQGDRNPVAEKSLRDMM YRLVNVLRSGGGAGKYKVDTDAFQNYYLAAHYLTCAAAAKEQGLKDIAAMNLTSVLRYVGPTIPADRAFYEAGLAWYEAG RKNMAFVMLNRFLDLSDAMDEPDSSAAVIENADFSDTDIPYDFTIPERAYCTESQREDVRNLVLEISMDRSSDQSLALKA CEHCGKPTYEANLTCHFCKKKYDPCVVTGYPIQSYDRVVFKNNGPELNAIRDMWNKWVEAFGTDPVTGMQAAPMY Q5DM57 subtomogramAveraging helicalArray 7.0
TAP (Tris-Acetate-Phosphate) Media
 Quantifoil R3.5/1 GOLD ETHANE
Chlamydomonas reinhardtii cells applied to quantifoil grids and plunge frozen; cilia project out from cell bodies and traverse holes in the carbon film.
 TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.5 5.0 FEI TITAN KRIOS AUTOGRID HOLDER FEI FALCON IV (4k x 4k) 2.6 1 C1 9.9 FSC 0.143 CUT-OFF RELION 3.1.3 Warp 18216 600 18216 MAXIMUM LIKELIHOOD emd_15977.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 775.68 775.68 775.68 90.0 90.0 90.0 X Y Z -0.38829696 1.3724803 0.0042394185 0.044678286 3.03 3.03 3.03 0.466 AUTHOR FLEXIBLE FIT