<?xml version="1.0" encoding="UTF-8"?>
<emd emdb_id="EMD-15951">
    <admin>
        <current_status>
            <date>2023-06-07</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2022-10-12</deposition>
            <header_release>2023-05-03</header_release>
            <map_release>2023-05-03</map_release>
            <update>2023-06-07</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>Other private</funding_body>
                <code>Chica and Heinze Schaller Foundation</code>
                <country>Germany</country>
            </grant_reference>
        </grant_support>
        <title>Tomogram of an EBOV-infected Huh7 cell showing a late endosome with internalized EBOV particles</title>
        <authors_list>
            <author ORCID="0000-0001-6099-7314">Winter SL</author>
            <author ORCID="0000-0002-7782-2139">Chlanda P</author>
        </authors_list>
        <keywords>Ebola virus, late endosome, low pH, ENDOCYTOSIS</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author ORCID="0000-0001-6099-7314" order="1">Winter SL</author>
                    <author ORCID="0000-0003-4792-6807" order="2">Golani G</author>
                    <author ORCID="0000-0001-7537-0549" order="3">Lolicato F</author>
                    <author order="4">Vallbracht M</author>
                    <author ORCID="0000-0002-1381-8093" order="5">Thiyagarajah K</author>
                    <author order="6">Ahmed SS</author>
                    <author order="7">Luchtenborg C</author>
                    <author ORCID="0000-0003-2982-4209" order="8">Fackler OT</author>
                    <author order="9">Brugger B</author>
                    <author ORCID="0000-0002-5829-6305" order="10">Hoenen T</author>
                    <author ORCID="0000-0002-6496-8286" order="11">Nickel W</author>
                    <author ORCID="0000-0003-1483-640X" order="12">Schwarz US</author>
                    <author ORCID="0000-0002-7782-2139" order="13">Chlanda P</author>
                    <title>The Ebola virus VP40 matrix layer undergoes endosomal disassembly essential for membrane fusion.</title>
                    <journal_abbreviation>Embo J.</journal_abbreviation>
                    <country>UK</country>
                    <volume>42</volume>
                    <first_page>e113578</first_page>
                    <last_page>e113578</last_page>
                    <year>2023</year>
                    <external_references type="PUBMED">37082863</external_references>
                    <external_references type="DOI">doi:10.15252/embj.2023113578</external_references>
                    <external_references type="ISSN">1460-2075</external_references>
                    <external_references type="CSD">0897</external_references>
                    <external_references type="ASTM">EMJODG</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-15951</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Ebola virus - Mayinga, Zaire, 1976</name>
        <supramolecule_list>
            <virus_supramolecule supramolecule_id="1">
                <name>Ebola virus - Mayinga, Zaire, 1976</name>
                <parent>0</parent>
                <sci_species_name ncbi="128952">Ebola virus - Mayinga, Zaire, 1976</sci_species_name>
                <virus_type>VIRUS-LIKE PARTICLE</virus_type>
                <virus_isolate>OTHER</virus_isolate>
                <virus_enveloped>true</virus_enveloped>
                <virus_empty>true</virus_empty>
            </virus_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>tomography</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <tomography_preparation preparation_id="1">
                    <buffer>
                        <ph>7.4</ph>
                    </buffer>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                    </vitrification>
                    <fiducial_markers_list>
                        <fiducial_marker>
                            <manufacturer>Aurion</manufacturer>
                            <diameter units="nanometer">10</diameter>
                        </fiducial_marker>
                    </fiducial_markers_list>
                    <sectioning>
                        <other_sectioning>NO SECTIONING</other_sectioning>
                    </sectioning>
                </tomography_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <tomography_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_cs units="mm">2.7</nominal_cs>
                    <nominal_defocus_min units="µm">4.0</nominal_defocus_min>
                    <nominal_defocus_max units="µm">4.0</nominal_defocus_max>
                    <nominal_magnification>33000.0</nominal_magnification>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K3 BIOQUANTUM (6k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">3.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </tomography_microscopy>
            </microscopy_list>
            <tomography_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <software_list>
                        <software>
                            <name>IMOD</name>
                        </software>
                    </software_list>
                    <number_images_used>41</number_images_used>
                </final_reconstruction>
            </tomography_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="477972">
        <file>emd_15951.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS SIGNED BYTE</data_type>
        <dimensions>
            <col>1205</col>
            <row>1593</row>
            <sec>249</sec>
        </dimensions>
        <origin>
            <col>11940</col>
            <row>-3480</row>
            <sec>-3740</sec>
        </origin>
        <spacing>
            <x>1205</x>
            <y>1593</y>
            <z>249</z>
        </spacing>
        <cell>
            <a units="Å">321.8555</a>
            <b units="Å">425.4903</b>
            <c units="Å">66.507904</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-128.0</minimum>
            <maximum>120.0</maximum>
            <average>0.08904279</average>
            <std>15.456816999999999</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">0.2671</x>
            <y units="Å">0.2671</y>
            <z units="Å">0.2671</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-15951::::</label>
        <annotation_details>Tomogram of a late endosome containing EBOV particles</annotation_details>
    </map>
</emd>
