<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1586" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2009-04-08</deposition>
         <header_release>2009-04-15</header_release>
         <map_release>2009-07-02</map_release>
         <update>2013-12-25</update>
      </key_dates>
      <title>Human Adenovirus type 2 ts1 mutant</title>
      <authors_list>
         <author>Perez-Berna AJ</author>
         <author>Marabini R</author>
         <author>Scheres SHW</author>
         <author>Menendez-Conejero R</author>
         <author>Dmitriev IP</author>
         <author>Curiel DT</author>
         <author>Mangel WF</author>
         <author>Flint SJ</author>
         <author>San Martin C</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Perez-Berna AJ</author>
               <author order="2">Marabini R</author>
               <author order="3">Scheres SHW</author>
               <author order="4">Menendez-Conejero R</author>
               <author order="5">Dmitriev IP</author>
               <author order="6">Curiel DT</author>
               <author order="7">Mangel WF</author>
               <author order="8">Flint SJ</author>
               <author order="9">San Martin C</author>
               <title>Structure and uncoating of immature adenovirus.</title>
               <journal>J.MOL.BIOL.</journal>
               <volume>392</volume>
               <first_page>547</first_page>
               <last_page>557</last_page>
               <year>2009</year>
               <external_references type="PUBMED">19563809</external_references>
               <external_references type="DOI">doi:10.1016/j.jmb.2009.06.057</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Human adenovirus type 2, ts1 mutant produced at 39 degrees</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Human adenovirus type 2, ts1 mutant produced at 39 degrees</name>
            <number_unique_components>1</number_unique_components>
         </sample_supramolecule>
         <virus_supramolecule supramolecule_id="1">
            <name synonym="Adenovirus">Human adenovirus 2</name>
            <sci_species_name ncbi="10515">Human adenovirus 2</sci_species_name>
            <natural_host database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>VERTEBRATES</synonym_organism>
            </natural_host>
            <host_system database="NCBI">
               </host_system>
            <virus_shell shell_id="1">
               <diameter units="&#8491;">950</diameter>
               <triangulation>25</triangulation>
            </virus_shell>
            <virus_type>VIRION</virus_type>
            <virus_isolate>SEROTYPE</virus_isolate>
            <virus_enveloped>false</virus_enveloped>
            <virus_empty>false</virus_empty>
            <syn_species_name>Adenovirus</syn_species_name>
         </virus_supramolecule>
      </supramolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <buffer>
                  <ph>7.4</ph>
                  <details>PBS (8 mM Na2HPO4, 2 mM KH2PO4, 137 mM NaCl, 2.7 mM KCl)</details>
               </buffer>
               <grid>
                  <details>Quantifoil R2/4</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <instrument>LEICA EM CPC</instrument>
                  <details>Vitrification instrument: Leica CPC</details>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TECNAI F20</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_cs units="mm">2.26</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.5</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">5.1</nominal_defocus_max>
               <nominal_magnification>50000.0</nominal_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>ZEISS SCAI</scanner>
                        <sampling_interval units="&#181;m">7</sampling_interval>
                     </digitization_details>
                     <number_real_images>297</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">10</average_electron_dose_per_image>
                     <bits_per_pixel>8.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Eucentric</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>Phase flip in micrograph</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>I</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">8.7</resolution>
               <resolution_method>FSC 0.33 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>xmipp, ctffind</name>
                  </software>
               </software_list>
               <number_images_used>9188</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="265303">
      <file>emd_1586.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>408</col>
         <row>408</row>
         <sec>408</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>408</x>
         <y>408</y>
         <z>408</z>
      </spacing>
      <cell>
         <a units="&#8491;">1126.08</a>
         <b units="&#8491;">1126.08</b>
         <c units="&#8491;">1126.08</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-2.96093</minimum>
         <maximum>4.52003</maximum>
         <average>-0.138364</average>
         <std>0.545806</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">2.76</x>
         <y units="&#8491;">2.76</y>
         <z units="&#8491;">2.76</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>1.25</level>
         </contour>
      </contour_list>
      <annotation_details>Human adenovirus type 5 at 8.9 Angstrom resolution, showing the structure of the mature, infective virion</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1586::::</details>
   </map>
   <interpretation>
      <modelling_list>
         <modelling>
            <initial_model>
               <access_code>1BLD</access_code>
               <chain>
                  <chain_id>A</chain_id>
               </chain>
            </initial_model>
            <refinement_protocol>RIGID BODY FIT</refinement_protocol>
            <software_list>
               <software>
                  <name>URO</name>
               </software>
            </software_list>
            <details>PDBEntryID_givenInChain. Protocol: Rigid Body</details>
            <refinement_space>RECIPROCAL</refinement_space>
         </modelling>
      </modelling_list>
   </interpretation>
</emd>