2024-11-13 REL PDBe PDBe PDBe 2022-08-31 2023-03-01 2023-03-01 2024-11-13 Helmholtz Association Germany Type 3 secretion system needle complex of Shigella flexneri Lunelli M type 3 secretion, needle complex, virulence factor, shigella, infection, PROTEIN TRANSPORT Flacht L Lunelli M Kaszuba K Chen ZA Reilly FJO Rappsilber J Kosinski J Kolbe M Integrative structural analysis of the type III secretion system needle complex from Shigella flexneri. Protein Sci. US 32 e4595 e4595 2023 36790757 doi:10.1002/pro.4595 1469-896X 0795 PRCIEI EMD-10046 other EM volume 8axk FULLOVERLAP Needle complex of the type 3 secretion system Needle complex of the type 3 secretion system 0 1 2 3 4 5 6 7 8 Shigella flexneri Export apparatus core 1 1 2 3 4 Shigella flexneri Inner rod 1 5 Shigella flexneri Needle filament 1 6 Shigella flexneri Ring formed by the N1 domain of the secretin MxiD 1 7 Shigella flexneri MxiJ loop interacting with the export apparatus 1 8 Shigella flexneri Surface presentation of antigens protein SpaP Shigella flexneri 0.024215562 5 LEVO MLSDMSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQQVPSNMTLNGIALIMALFVMKPIIEAGYENYLNGPQ KFDTISDIVRFSDSGLMEYKQYLKKHTDLELARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLP FVVVDLVISSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALIEQYINIPA P0A1L3 Surface presentation of antigens protein SpaR Shigella flexneri 0.028513773 1 LEVO MDISSWFESIHVFLILLNGVFFRLAPLFFFLPFLNNGIISPSIRIPVIFLVASGLITSGKVDIGSSVFEHVYFLMFKEII VGLLLSFCLSLPFWIFHAVGSIIDNQRGATLSSSIDPANGVDTSELAKFFNLFSAVVFLYSGGMVFILESIQLSYNICPL FSQCSFRISNILTFLTLLASQAVILASPVMIVLLLSEVLLGVLSRFAPQMNAFSVSLTIKSLLAIFIIFICSSTIYFSKV QFFLGEHKFFTNLFVR P0A1M6 Surface presentation of antigens protein SpaQ Shigella flexneri 0.009433338 4 LEVO MSDIVYMGNKALYLILIFSLWPVGIATVIGLSIGLLQTVTQLQEQTLPFGIKLIGVSISLLLLSGWYGEVLLSFCHEIMF LIKSGV P0A1M4 Surface presentation of antigens protein SpaS Shigella flexneri 0.039903348 1 LEVO MANKTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISFFSLSDVMLLYRYVIINDFEINEGKYFFAVVIVFFKI IGFPLFFCVLSAVLPTLVQTKFVLATKAIKIDFSVLNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFWINDRKIIF SQVFSSVDGLYLIWGRLFKDIILFFLAFSILVIILDFVIEFILYMKDMMMDKQEIKREYIEQEGHFETKSRRRELHIEIL SEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFV DFEHLDEVLRLIVWLEQVENTH P0A1M8 Protein MxiI Shigella flexneri 0.01064 6 LEVO MNYIYPVNQVDIIKASDFQSQEISSLEDVVSAKYSDIKMDTDIQVSQIMEMVSNPESLNPESLAKLQTTLSNYSIGVSLA GTLARKTVSAVETLLKS P0A225 Protein MxiH Shigella flexneri 0.011060279 28 Shigella flexneri LEVO MASWSHPQFEKIEGRMSVTVPNDDWTLSSLSETFDDGTQTLQGELTLALDKLAKNPSNPQLLAEYQSKLSEYTLYRNAQS NTVKVIKDVDAAIIQNFR P0A223 Outer membrane protein MxiD Shigella flexneri 0.063230414 16 LEVO MKKFNIKSLTLLIVLLPLIVNANNIDSHLLEQNDIAKYVAQSDTVGSFFERFSALLNYPIVVSKQAAKKRISGEFDLSNP EEMLEKLTLLVGLIWYKDGNALYIYDSGELISKVILLENISLNYLIQYLKDANLYDHRYPIRGNISDKTFYISGPPALVE LVANTATLLDKQVSSIGTDKVNFGVIKLKNTFVSDRTYNMRGEDIVIPGVATVVERLLNNGKALSNRQAQNDPMPPFNIT QKVSEDSNDFSFSSVTNSSILEDVSLIAYPETNSILVKGNDQQIQIIRDIITQLDVAKRHIELSLWIIDIDKSELNNLGV NWQGTASFGDSFGASFNMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSS LEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNS NEIISIPFLSSIPVIGNVFKYKTSNISNIVRVFLIQPREIKESSYYNTAEYKSLISEREIQKTTQIIPSETTLLEDEKSL VSYLNY Q04641 Lipoprotein MxiJ Shigella flexneri 0.027542055 24 LEVO MIRYKGFILFLLLMLIGCEQREELISNLSQRQANEIISVLERHNITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPN PERVDISQMFPTDSLVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEKNISSKPMHISVIAIYDSPKESE LLVSNIKRFLKNTFSDVKYENISVILTPKEEYVYTNVQPVKEVKSEFLTNEVIYLFLGMAVLVVILLVWAFKTGWFKRNK I Q06081 singleParticle particle 8.0 Quantifoil R2/1 COPPER GLOW DISCHARGE AIR ETHANE 100 295 FEI VITROBOT MARK IV FEI TITAN KRIOS OTHER BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.5 4.0 101179.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON II (4k x 4k) INTEGRATING 4096 4096 1-6 1 5238 1.5 25.0 1 EMD-10046 4.05 FSC 0.143 CUT-OFF RELION 3.0 90547 MAXIMUM LIKELIHOOD RELION 3.0 MAXIMUM LIKELIHOOD RELION 3.0 emd_15700.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 480 480 0 0 0 480 480 480 498.41714 498.41714 498.41714 90.0 90.0 90.0 X Y Z -0.20915963 0.30591616 0.0004833863 0.0075753983 1.038369 1.038369 1.038369 0.05 AUTHOR Main map (sharpened and masked) 6RWY PDB experimental model 6RWK PDB experimental model 6RWX PDB experimental model FLEXIBLE FIT REAL 59.200000000000003 emd_15700_msk_1.map emd_15700_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 480 480 0 0 0 480 480 480 498.41714 498.41714 498.41714 90.0 90.0 90.0 X Y Z -0.032236427 0.08486321 0.00011491885 0.0043230616 1.038369 1.038369 1.038369 AUTHOR emd_15700_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 480 480 0 0 0 480 480 480 498.41714 498.41714 498.41714 90.0 90.0 90.0 X Y Z -0.028413104 0.08163158 0.0001132997 0.004324944 1.038369 1.038369 1.038369 AUTHOR