<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1570" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2008-10-09</deposition>
         <header_release>2008-10-14</header_release>
         <map_release>2009-04-01</map_release>
         <update>2014-04-16</update>
      </key_dates>
      <title>CryoEM reconstructions of PV1 complexed with deglycosylated CD155</title>
      <authors_list>
         <author>Zhang P</author>
         <author>Mueller S</author>
         <author>Morais MC</author>
         <author>Bator-Kelly CM</author>
         <author>Bowman VD</author>
         <author>Hafenstein S</author>
         <author>Wimmer E</author>
         <author>Rossmann MG</author>
      </authors_list>
      <keywords>Poliovirus type1, poliovirus receptor</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Zhang P</author>
               <author order="2">Mueller S</author>
               <author order="3">Morais MC</author>
               <author order="4">Bator CM</author>
               <author order="5">Bowman VD</author>
               <author order="6">Hafenstein S</author>
               <author order="7">Wimmer E</author>
               <author order="8">Rossmann MG</author>
               <title>Crystal structure of CD155 and electron microscopic studies of its complexes with polioviruses.</title>
               <journal>PROC.NAT.ACAD.SCI.USA</journal>
               <volume>105</volume>
               <first_page>18284</first_page>
               <last_page>18289</last_page>
               <year>2008</year>
               <external_references type="PUBMED">19011098</external_references>
               <external_references type="DOI">doi:10.1073/pnas.0807848105</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <pdb_list>
         <pdb_reference>
            <pdb_id>3epc</pdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </pdb_reference>
      </pdb_list>
   </crossreferences>
   <sample>
      <name>CD155-PV1 complex</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>CD155-PV1 complex</name>
            <oligomeric_state>60 copies of CD166 bind to  icosahedral protein shell of a PV1 particle</oligomeric_state>
            <number_unique_components>2</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">11.1</theoretical>
            </molecular_weight>
         </sample_supramolecule>
         <virus_supramolecule supramolecule_id="1">
            <name synonym="poliovirus type 1">Human poliovirus 1</name>
            <sci_species_name ncbi="12080">Human poliovirus 1</sci_species_name>
            <natural_host database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>VERTEBRATES</synonym_organism>
            </natural_host>
            <host_system database="NCBI">
               </host_system>
            <molecular_weight>
               <theoretical units="MDa">8.5</theoretical>
            </molecular_weight>
            <virus_shell shell_id="1">
               <diameter units="&#8491;">310</diameter>
            </virus_shell>
            <virus_type>VIRION</virus_type>
            <virus_isolate>SEROTYPE</virus_isolate>
            <virus_enveloped>false</virus_enveloped>
            <virus_empty>false</virus_empty>
            <syn_species_name>poliovirus type 1</syn_species_name>
         </virus_supramolecule>
      </supramolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">2</concentration>
               <buffer>
                  <ph>7.5</ph>
                  <details>10mM Tris-HCl, 20mM NaCl</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>A small vial of ethane is placed inside a larger liquid nitrogen reservoir. The grid holding a few microliters of the sample is held in place at the bottom of a plunger by the means of fine tweezers. Once the ethane in the vial is completely frozen, it needs to be slightly melted. When the liquid ethane is ready, a piece of filter paper is then pressed against the sample to blot of excess buffer, sufficient to leave a thin layer on the grid. After a predetermined time, the filter paper is removed, and the plunger is allowed to drop into the liquid ethane. Once the grid enters the liquid ethane, the sample is rapidly frozen, and the grid is transferred under liquid nitrogen to a storage box immersed liquid nitrogen for later use in the microscope.</details>
               </staining>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <instrument>OTHER</instrument>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI/PHILIPS CM300FEG/T</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_defocus_min units="&#181;m">0.857</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">2.126</nominal_defocus_max>
               <nominal_magnification>47000.0</nominal_magnification>
               <calibrated_magnification>47190.0</calibrated_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>live FFT at 200K</astigmatism>
                  </legacy>
               </alignment_procedure>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">KODAK SO-163 FILM</film_or_detector_model>
                     <number_real_images>47</number_real_images>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Eucentric</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>I</point_group>
               </applied_symmetry>
               <resolution res_type="BY AUTHOR" units="&#8491;">8.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <details>Final map includes data to 8.0 Ang resolution (fsc 0.5 cut-off), magnification of final map standardized to a map calculated from PV1 atomic coordinates (PDB accession no 2PLV) resulting in final pixel separation of 2.65 Ang</details>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="39917">
      <file>emd_1570.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>217</col>
         <row>217</row>
         <sec>217</sec>
      </dimensions>
      <origin>
         <col>-108</col>
         <row>-108</row>
         <sec>-108</sec>
      </origin>
      <spacing>
         <x>217</x>
         <y>217</y>
         <z>217</z>
      </spacing>
      <cell>
         <a units="&#8491;">575.05005</a>
         <b units="&#8491;">575.05005</b>
         <c units="&#8491;">575.05005</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-6.83590221</minimum>
         <maximum>32.252010349999999</maximum>
         <average>1.63265026</average>
         <std>5.40350008</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">2.65</x>
         <y units="&#8491;">2.65</y>
         <z units="&#8491;">2.65</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>7.03</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>CryoEM reconstructions of PV1 complexed with deglycosylated CD155</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1570::::</details>
   </map>
</emd>