2024-07-03 REL PDBe PDBe PDBe 2022-08-31 2024-04-10 2024-04-10 2024-07-03 Novo Nordisk Foundation NNF0024386 Denmark Novo Nordisk Foundation NNF14CC0001 Denmark Novo Nordisk Foundation NNF17SA0030214 Denmark Novo Nordisk Foundation NNF18OC0055061 Denmark Tenjo-Castano F Sofos N Stella S Fuglsang A Pape T Mesa P Stutzke LS Temperini P Montoya G CRISPR, complex, transposition, DNA BINDING PROTEIN Tenjo-Castano F Sofos N Stutzke LS Temperini P Fuglsang A Pape T Mesa P Montoya G Mol.Cell US 84 2353 2367.e5 2024 38834066 doi:10.1016/j.molcel.2024.05.005 1097-2765 2168 MOCEFL EMD-15698 other EM volume EMD-19075 other EM volume EMD-19282 other EM volume EMD-19283 other EM volume EMD-19284 other EM volume EMD-19286 other EM volume 8axa FULLOVERLAP Ternary complex of ShCas12k bound to sgRNA and dsDNA. Ternary complex of ShCas12k bound to sgRNA and dsDNA. 0 1 2 3 4 Scytonema hofmannii 0.193 Cas12k Scytonema hofmannii 0.074738258 1 Escherichia coli LEVO MSQITIQARLISFESNRQQLWKLMADLNTPLINELLCQLGQHPDFEKWQQKGKLPSTVVSQLCQPLKTDPRFAGQPSRLY MSAIHIVDYIYKSWLAIQKRLQQQLDGKTRWLEMLNSDAELVELSGDTLEAIRVKAAEILAIAMPASESDSASPKGKKGK KEKKPSSSSPKRSLSKTLFDAYQETEDIKSRSAISYLLKNGCKLTDKEEDSEKFAKRRRQVEIQIQRLTEKLISRMPKGR DLTNAKWLETLLTATTTVAEDNAQAKRWQDILLTRSSSLPFPLVFETNEDMVWSKNQKGRLCVHFNGLSDLIFEVYCGNR QLHWFQRFLEDQQTKRKSKNQHSSGLFTLRNGHLVWLEGEGKGEPWNLHHLTLYCCVDNRLWTEEGTEIVRQEKADEITK FITNMKKKSDLSDTQQALIQRKQSTLTRINNSFERPSQPLYQGQSHILVGVSLGLEKPATVAVVDAIANKVLAYRSIKQL LGDNYELLNRQRRQQQYLSHERHKAQKNFSPNQFGASELGQHIDRLLAKAIVALARTYKAGSIVLPKLGDMREVVQSEIQ AIAEQKFPGYIEGQQKYAKQYRVNVHRWSYGRLIQSIQSKAAQTGIVIEEGKQPIRGSPHDKAKELALSAYNLRLTRRSG SEFELENLYFQ A0A8M0FGU0 sgRNA Scytonema hofmannii 0.084006516 1 GGAUAUUAAUAGCGCCGCAAUUCAUGCUGCUUGCAGCCUCUGAAUUUUGUUAAAUGAGGGUUAGUUUGACUGUAUAAAUA CAGUCUUGCUUUCUGACCCUGGUAGCUGCUCACCCUGAUGCUGCUGUCAAUAGACAGGAUAGGUGCGCUCCCAGCAAUAA GGGCGCGGAUGUACUGCUGUAGUGGCUACUGAAUCACCCCCGAUCAAGGGGGAACCCUCCAAAAGGUGGGUUGAAAGGAG AAGUCAUUUAAUAAGGCCACU DNA target strand Scytonema hofmannii 0.016858855 1 (DC)(DT)(DA)(DG)(DA)(DA)(DA)(DG)(DA)(DC)(DT)(DT)(DT)(DT)(DA)(DA)(DC)(DA)(DG)(DT) (DG)(DG)(DC)(DC)(DT)(DT)(DA)(DT)(DT)(DA)(DA)(DA)(DT)(DG)(DA)(DC)(DT)(DT)(DC)(DT) (DC)(DA)(DA)(DC)(DC)(DA)(DT)(DC)(DT)(DT)(DG)(DC)(DT)(DG)(DA) DNA DNA non-target strand Scytonema hofmannii 0.017027963 1 (DT)(DC)(DA)(DG)(DC)(DA)(DA)(DG)(DA)(DT)(DG)(DG)(DT)(DT)(DG)(DA)(DG)(DA)(DA)(DG) (DT)(DC)(DA)(DT)(DT)(DT)(DA)(DA)(DT)(DA)(DA)(DG)(DG)(DC)(DC)(DA)(DC)(DT)(DG)(DT) (DT)(DA)(DA)(DA)(DA)(DG)(DT)(DC)(DT)(DT)(DT)(DC)(DT)(DA)(DG) DNA water 1.8015e-05 3 HOH singleParticle particle 9.6 7.5 300.0 KCl sodium chloride 30.0 HEPES 2-[4-(2-hydroxyethyl)piperazin-1-yl]ethanesulfonic acid 5.0 MgCl2 magnesium chloride 1.0 TCEP Tris(2-carboxyethyl)phosphine UltrAuFoil R1.2/1.3 GOLD 300 GLOW DISCHARGE 60 AIR ETHANE 100 277 FEI VITROBOT MARK IV

3 s blotting, 4 degrees celcius.

TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 0.6 2.0 96000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON III (4k x 4k) COUNTING 1 2231 45.0 45.0 1 858078

A reconstruction of the shCas12k-sgRNA complex

C1 2.96 FSC 0.143 CUT-OFF cryoSPARC 3.3.1 136646 MAXIMUM LIKELIHOOD cryoSPARC 3.2.0 MAXIMUM LIKELIHOOD cryoSPARC 3.3.1 50 3000.0 cryoSPARC 3.2.0 AB INITIO MODEL REAL emd_15697_msk_1.map emd_15697_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 319.488 319.488 319.488 90.0 90.0 90.0 X Y Z -0.002554541 3.1353967 0.0020482768 0.035188925 0.832 0.832 0.832 AUTHOR ::::EMDATABANK.org::::EMD-15697:::: DeepEMhancer map used for model building emd_15697_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 319.488 319.488 319.488 90.0 90.0 90.0 X Y Z -0.98189336 2.0577722 0.00011816294 0.041176014 0.832 0.832 0.832 AUTHOR ::::EMDATABANK.org::::EMD-15697:::: emd_15697_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 319.488 319.488 319.488 90.0 90.0 90.0 X Y Z -0.90253353 1.7255989 0.00010124012 0.041239798 0.832 0.832 0.832 AUTHOR ::::EMDATABANK.org::::EMD-15697::::