<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="https://ftp.ebi.ac.uk/pub/databases/em_ebi/emdb_related/emdb-schemas/emdb_schemas/v3/v3_0_9_0/emdb.xsd" version="3.0.9.0" emdb_id="EMD-15670">
    <admin>
        <current_status>
            <date>2023-12-13</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2022-08-25</deposition>
            <header_release>2022-11-02</header_release>
            <map_release>2022-11-02</map_release>
            <update>2023-12-13</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>Other government</funding_body>
                <code>DLR01Kl1820</code>
                <country>Germany</country>
            </grant_reference>
        </grant_support>
        <title>Cryo-EM volume of HflX bound to the Listeria monocytogenes 50S ribosomal subunit</title>
        <authors_list>
            <author ORCID="0000-0003-0145-4891">Koller TO</author>
            <author ORCID="0000-0003-2157-4639">Crowe-McAuliffe C</author>
            <author ORCID="0000-0003-3816-3828">Wilson DN</author>
        </authors_list>
        <keywords>Listeria monocytogenes, 50S, Ribosome, HflX, Antibiotic, Target protection, GTPase, GDPNP</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Koller TO</author>
                    <author order="2">Turnbull KJ</author>
                    <author order="3">Vaitkevicius K</author>
                    <author order="4">Crowe-McAuliffe C</author>
                    <author order="5">Roghanian M</author>
                    <author order="6">Bulvas O</author>
                    <author order="7">Nakamoto JA</author>
                    <author order="8">Kurata T</author>
                    <author order="9">Julius C</author>
                    <author order="10">Atkinson GC</author>
                    <author order="11">Johansson J</author>
                    <author ORCID="0000-0003-2389-5057" order="12">Hauryliuk V</author>
                    <author ORCID="0000-0003-3816-3828" order="13">Wilson DN</author>
                    <title>Structural basis for HflXr-mediated antibiotic resistance in Listeria monocytogenes.</title>
                    <journal_abbreviation>Nucleic Acids Res.</journal_abbreviation>
                    <country>UK</country>
                    <volume>50</volume>
                    <first_page>11285</first_page>
                    <last_page>11300</last_page>
                    <year>2022</year>
                    <external_references type="PUBMED">36300626</external_references>
                    <external_references type="DOI">doi:10.1093/nar/gkac934</external_references>
                    <external_references type="ISSN">1362-4962</external_references>
                    <external_references type="CSD">0389</external_references>
                    <external_references type="ASTM">NARHAD</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-15161</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>HflXr bound to the Listeria monocytogenes ribosome</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-15204</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>Listeria monocytogenes ribosome</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-15175</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>Lincomycin bound to the Listeria monocytogenes ribosome</details>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Masked post processed map of HflX bound to the 50S subunit of the Listeria monocytogenes ribosome.</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Masked post processed map of HflX bound to the 50S subunit of the Listeria monocytogenes ribosome.</name>
                <parent>0</parent>
                <natural_source database="NCBI">
                    <organism ncbi="169963">Listeria monocytogenes EGD-e</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>7.5</ph>
                    </buffer>
                    <grid>
                        <model>Quantifoil R2/2</model>
                        <material>COPPER</material>
                        <mesh>300</mesh>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>CONTINUOUS</film_topology>
                            <film_thickness>20.0</film_thickness>
                        </support_film>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE-PROPANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <instrument>FEI VITROBOT MARK IV</instrument>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_defocus_min units="µm">0.8</nominal_defocus_min>
                    <nominal_defocus_max units="µm">2.0</nominal_defocus_max>
                    <nominal_magnification>165000.0</nominal_magnification>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <detector_mode>COUNTING</detector_mode>
                            <average_electron_dose_per_image units="e/Å^2">30.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <particle_selection>
                    <number_selected>268147</number_selected>
                </particle_selection>
                <startup_model type_of_model="EMDB MAP">
                    <emdb_id>EMD-15175</emdb_id>
                </startup_model>
                <final_reconstruction>
                    <resolution units="Å" res_type="BY AUTHOR">2.76</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.1.3</version>
                        </software>
                    </software_list>
                    <number_images_used>76519</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>ANGULAR RECONSTITUTION</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.1.3</version>
                        </software>
                    </software_list>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>ANGULAR RECONSTITUTION</type>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="186625">
        <file>emd_15670.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>360</col>
            <row>360</row>
            <sec>360</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>360</x>
            <y>360</y>
            <z>360</z>
        </spacing>
        <cell>
            <a units="Å">295.2</a>
            <b units="Å">295.2</b>
            <c units="Å">295.2</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.1374938</minimum>
            <maximum>0.17328663</maximum>
            <average>0.00009356254</average>
            <std>0.006772678</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">0.82000005</x>
            <y units="Å">0.82000005</y>
            <z units="Å">0.82000005</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.025</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-15670::::</label>
        <annotation_details>masked post processed map</annotation_details>
    </map>
    <interpretation>
        <additional_map_list>
            <additional_map format="CCP4" size_kbytes="186625">
                <file>emd_15670_additional_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>360</col>
                    <row>360</row>
                    <sec>360</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>360</x>
                    <y>360</y>
                    <z>360</z>
                </spacing>
                <cell>
                    <a units="Å">295.2</a>
                    <b units="Å">295.2</b>
                    <c units="Å">295.2</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.049145974</minimum>
                    <maximum>0.065861054</maximum>
                    <average>0.00009338275</average>
                    <std>0.0027628818</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">0.82000005</x>
                    <y units="Å">0.82000005</y>
                    <z units="Å">0.82000005</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-15670::::</label>
                <annotation_details>masked post processed 3A lowpass filtered map</annotation_details>
            </additional_map>
            <additional_map format="CCP4" size_kbytes="186625">
                <file>emd_15670_additional_2.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>360</col>
                    <row>360</row>
                    <sec>360</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>360</x>
                    <y>360</y>
                    <z>360</z>
                </spacing>
                <cell>
                    <a units="Å">295.2</a>
                    <b units="Å">295.2</b>
                    <c units="Å">295.2</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.1374938</minimum>
                    <maximum>0.17328663</maximum>
                    <average>0.000038587565</average>
                    <std>0.010024172</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">0.82000005</x>
                    <y units="Å">0.82000005</y>
                    <z units="Å">0.82000005</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-15670::::</label>
                <annotation_details>post processed map</annotation_details>
            </additional_map>
            <additional_map format="CCP4" size_kbytes="186625">
                <file>emd_15670_additional_3.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>360</col>
                    <row>360</row>
                    <sec>360</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>360</x>
                    <y>360</y>
                    <z>360</z>
                </spacing>
                <cell>
                    <a units="Å">295.2</a>
                    <b units="Å">295.2</b>
                    <c units="Å">295.2</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.030361371</minimum>
                    <maximum>0.048494168</maximum>
                    <average>0.00003865488</average>
                    <std>0.0023801322</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">0.82000005</x>
                    <y units="Å">0.82000005</y>
                    <z units="Å">0.82000005</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-15670::::</label>
                <annotation_details>3D refined map</annotation_details>
            </additional_map>
        </additional_map_list>
        <half_map_list>
            <half_map format="CCP4" size_kbytes="186625">
                <file>emd_15670_half_map_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>360</col>
                    <row>360</row>
                    <sec>360</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>360</x>
                    <y>360</y>
                    <z>360</z>
                </spacing>
                <cell>
                    <a units="Å">295.2</a>
                    <b units="Å">295.2</b>
                    <c units="Å">295.2</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.046295088</minimum>
                    <maximum>0.06464991</maximum>
                    <average>0.00003860842</average>
                    <std>0.00481595</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">0.82000005</x>
                    <y units="Å">0.82000005</y>
                    <z units="Å">0.82000005</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-15670::::</label>
                <annotation_details>half map 2</annotation_details>
            </half_map>
            <half_map format="CCP4" size_kbytes="186625">
                <file>emd_15670_half_map_2.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>360</col>
                    <row>360</row>
                    <sec>360</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>360</x>
                    <y>360</y>
                    <z>360</z>
                </spacing>
                <cell>
                    <a units="Å">295.2</a>
                    <b units="Å">295.2</b>
                    <c units="Å">295.2</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.053171173</minimum>
                    <maximum>0.06647063</maximum>
                    <average>0.000038566708</average>
                    <std>0.004775861</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">0.82000005</x>
                    <y units="Å">0.82000005</y>
                    <z units="Å">0.82000005</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-15670::::</label>
                <annotation_details>half map 1</annotation_details>
            </half_map>
        </half_map_list>
    </interpretation>
</emd>
