2022-10-26 REL PDBe PDBe PDBe 2022-08-09 2022-10-26 2022-10-26 2022-10-26 European Research Council (ERC) European Union rotational state 3 of the Trypanosoma brucei mitochondrial ATP synthase dimer Muehleip A Gahura O Zikova A Amunts A Gahura O Muhleip A Hierro-Yap C Panicucci B Jain M Hollaus D Slapnickova M Zikova A Amunts A An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases. Nat Commun UK 13 5989 5989 2022 36220811 doi:10.1038/s41467-022-33588-z 2041-1723 EMD-15573 associated EM volume
rotational state 3 of the Trypanosoma brucei mitochondrial ATP synthase dimer
 8apk FULLOVERLAP mitochondrial ATP synthase dimer from Trypanosoma brucei mitochondrial ATP synthase dimer from Trypanosoma brucei 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 Trypanosoma brucei brucei Lister427 Mitochondrion subunit-e Trypanosoma brucei brucei 927/4 GUTat10.1 0.010448932000000001 2 LEVO MSAKAAPKTLHQVRNVAYFFAAWLGVQKGYIEKSANDRLWVEHQRKVRQQNVERQQALDSIKLMQQGVRATTPGQLEGVP AELQQLAEAFTK subunit-g Trypanosoma brucei brucei MHOM/CI/86/DAL972 0.016092667999999997 2 LEVO MSSTKCAVACKIMTPLCNAASKVQARSAKKLAALTDAGIQKTISEHNANGTDAAVSSTKRYLAEQRQLFHYRVVRFFDEC HYIISGEYFAQYTKVNLIWDLRFLTKLVVLFLIGTVLGRQSIFPPIDPDSPLVEALVTKVNPNY ATP synthase subunit a Trypanosoma brucei brucei 0.028708406 1 LEVO MFLFFFCDLFWLRLLLCMYYCVWSRLCFIVYFNCLMLIFDFLLFCLFDLYLFVGLCLFLLLWFMLFNLYSLILYYCITYL NLYLLFCIVFLLYIAFLFLFCFLCDFFLFNNLLVGDSFMDVFFIRFLLCFLECFSLLCRCLSTFLRLFCNLLSSHFLLLM FFDFFYFIFVFFFYGVFCYWFILFIFVFCFCLLFYVFLYLLDLFAAILQLFIFCNMILQLIMDFLLFLLFV subunit-8 Trypanosoma brucei brucei 0.013750958 1 LEVO MLRRLGANVSNMARPMNKYAVTVSPRRHLEPMSTWYLASWAMVWYYAFFFWMPMVWTDIMVPSFVYNKLPVIHFLQEKRA EQKLRRVLDETYTEWTEELDQAHVTDAITRSLNI subunit-d Trypanosoma brucei brucei 0.043379324 1 LEVO MRRVSSPNITIQSVRWISGVSPLLYFPPTTTSTTNREDQINKNTNIAIQMIKRYKGEVPPHYTRKSSATIEQVEKEIDAL LGGAEKLRKTSTDDQPMDKLTLMERCLRHALWSYHKEEGRYDFDQIGRWVVYTPEDEVKLAQLKREVEAKEKLAALRKRR EEEGLPGGPVPRINWPQEYSSFIDREPVVAKRIRYDTLASTTLERDEKQIESTLQQYRRASQDKRLDDLVDLLERFKPVL AREAIMQRLTIKHLEGQLGVWRYMDWCPEVRDRAELEVDITGWQWWSPLEERRLLPVRLRSVNEVREIMSKTQAKKSAEA AERNPIVTQTSTGDNARDRLLKEVLALQARINQRDEVEPSQTEQKKKAHH ATPTB1 Trypanosoma brucei brucei 927/4 GUTat10.1 0.046883637 1 LEVO (AME)QGSWSVLKKNCSNFFPGLLAFAQQTQEAYGIWLRIYNRQQKYGPTDFVEQSETFSPDYHKRFHSQDKNMWVDKEL CTEVSQKEVARLMTYKLDMWRMAHCAGALLATGGYAIPFGLFWLANDTWVPSSFNLTGEELRAWREAQDLYRYRSAPSYL TDTKWHFDFHAYPWNETQERAWDDLFEKNDVRRDPKVVRPAAEMYDGFIKFELIRRKSLRHLCRSMNIPTFPMLARLCNG TRVRDYWNLAWCEDYMVITQRLHESMTDEELYDYAWRRYLAPYDKNLNREQLMERVEDYFEFLGPDFVAHGKAPNLVILT NYVLGYYNDPAYLEGDISELDKNDYDHLASWGKDAFLRRLEFENGPLRDQVEAHTQRLLAERAAIAKGDNAAAVEGRHTA subunit-f Trypanosoma brucei brucei 927/4 GUTat10.1 0.017182668 1 LEVO MVLFSTYRSSRLVSKEFLHGPVMRFRALGEYYFQRAWNGTLNWALPGEYRLYAVMIPFIYFYHRWHNDHTLDRDHVEKAM IMRWGGTLEDVRKLSAKDQLRVRCFTDIEKLYSAYGPKDTYLQPPGDTLPGKDFYRKAGGAQAHH ATPTB3 Trypanosoma brucei brucei 0.027646643 1 LEVO MSKQLTFISAGATAAVLQSASAIVSKVAGGRVQTKTAKEAGRHAVVVGPETPIGVHTAVTEVPKSAQDPLFSGVSTVVVR AVLPRAAPDSVQLRDALDVYASAGIDTKEEVRSATEAFKKSAEVAVGKAKAKGVKRIVLVVKQASKHNCINELFKKISTE TIESAGLTTEVVGTAAVANQLIVNPESLGVVLLNDVAATEQIELAFAGVVGGVSRVYHTVEGGKISAGHSFKSVALAVAQ ELRELGLSSEADKVEAAASKNPRAVVSAL ATPTB4 Trypanosoma brucei brucei 0.017218723000000002 1 LEVO MRRTFISFSAASAAAAAPVTSTKMQTLHKLLTGEVSFKNKAPVKDCNIVHQFGENWATELSAYAKTLPAEQQKIIVRQIA RVKLTRYTVAELAAYCGDGPALLDETARAANIEQGVAFVKAKGVEAFEKYVAEESTNANWKPEEAKKFIEDVKAKAK subunit-i/j Trypanosoma brucei brucei 927/4 GUTat10.1 0.012661607 1 LEVO MVYTRWKCDRLPVFQLKLFTQEYPMHAAVGIFTIIFLWKHMSHCSEETERKYGWWAGYPYWRDPIARRNETKYKQMIINN DVDITHPKWTGCSVEQLEELSRVV ATPTB6 Trypanosoma brucei brucei MHOM/CI/86/DAL972 0.020307389 1 LEVO MTKYELKMQYFDEWMIRWRKFQTESDWEIEKGRQWWRRFNMAVSGALFCGLVLYTSGTATLKRQYGLPHFFDIGVDGQAK ETMLKTLTSRWRYTPQGYGRVLITGVPTYILFVTLEHYRERRRMQQYLQQNTVFGEQMRRLLSTGKIEEYLPVNIKATLP ASQQAIYNY subunit-k Trypanosoma brucei brucei 927/4 GUTat10.1 0.014531121 1 LEVO MLRRSSAALIRRTPVRHSGGELFVRPKLEEIPPADQCRGFFGPLNDSLKFLRLLDIKWMMNRAVAMRREYLIATPTLFTF IWMFTWKGAVIYFWGDRAPPRRMDWNTEETGRLPLGFKPTPAPL ATPTB11 Trypanosoma brucei brucei 927/4 GUTat10.1 0.017929576 1 LEVO MLRKTPLFAMATTRKALVGNGPTFSTGGECMNTCDIQNAFPMNDRGVRSSSPFQEPNTAIYDSYLAWTYFQPMDVHIEKL PAPEAKYYQRHTKKPWDVSSTELTEIQSRKKYFQTLGYLVAFIYLYFLMPKEKSFSGLSGPDGHWIMLPKGRPELF ATPTB12 Trypanosoma brucei brucei 927/4 GUTat10.1 0.011676293999999999 1 LEVO MSSGFHFHDVSNDAIKGMPPSEALHKHLENAQLAHRICLAKALKAGEPPVEKCALTWGEVLIRYQAWSEYRPPFQDSVAQ AKYKKYWSKKRQEEDDKNPFK subunit-b Trypanosoma brucei brucei MHOM/CI/86/DAL972 0.012325279 1 LEVO MLRRLVPRVMMAPMGGATALCTSRGYNMLVFRDPKRRPQLSEEERAKVVVNQAEWPEEFKDFDPDDPYKNSPEIIKGMSS WNLFLWGVECAFIYQFYELVFPKSI ATPEG3 Trypanosoma brucei brucei 927/4 GUTat10.1 0.012293796 1 LEVO MTENIEAVMSDFWSNPADHFRPNLKALTLYAERQHYVDRWLHVKERWLAPWYLPWWSPLFQLGTWYSQRSRNLFLVENHL SYRPYKFRRNDEDRNNPY ATPEG4 Trypanosoma brucei brucei 0.007649776 1 LEVO MLLGGFVPRRFSQFNRDPCWMFFIFSVGFWLGEYPAMMIKYNARDLVYDPHRYVWSHHDDHH ATP synthase subunit alpha, mitochondrial Trypanosoma brucei brucei 0.063574465 3 LEVO MRRFGSKFASGLASRCALACPLASAATAPAGASTTSSTSSAQKSFFKTTEMIGYVHSIDGTIATLIPAPGNPGVAYNTII QIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQSGQKVMATGQLLHIPVGAGVLGKVVNPLGHEVPVGLVTRSRRLLD STLGKVDTGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIY VSIGQRCSNVARIHRLLQSYGALRYTTVMAATAAEPAGLQYLAPYAGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISL LLRRPPGREAYPGDVFYLHSRLLERAAMLSPGKGGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRP AVNIGLSVSRVGSSAQNAAMKGVAGKLKGILAEYRKLAADSVGGQQVQTIPMIRGARFVALFNQKQPSYFMNAIVSLYAC LNGYLDDVKVQYVKFYEYLLVHRDLGIMYGTAKNKFFYMYVQELNYLIRFFTLNSPILHGELEEMLKQHTHLFLQHYQSK MNAIKSEKDVKALKNLLYSCKRAV ATP synthase subunit beta, mitochondrial Trypanosoma brucei brucei 0.055836879 3 LEVO MLTRFRSAVLRGAVSITGARAASTAPVADHKGRVGHVSQVIGAVVDVHFADGVPPVLTALDVVDKLGRDEPLTLEIVQHL DAHTGRCIAMQTTDLLKLKAKVVSTGGNISVPVGRETLGRIFNVLGDAIDQRGPVGEKLRMPIHAVAPKLADQAAEDAVL TTGIKVIDLILPYCKGGKIGLFGGAGVGKTVIIMELINNVAKGHGGFSVFAGVGERTREGTDLYLEMMQSKVIDLKGESK CVLVYGQMNEPPGARARVAQSALTMAEYFRDVEGQDVLLFIDNIFRFTQANSEVSALLGRIPAAVGYQPTLAEDLGQLQE RITSTTKGSITSVQAVYVPADDITDPAPATTFSHLDATTVLDRAVAESGIYPAVNPLECASRIMDPDVISVDHYNVAQDV VQMLTKYRELQDIIAVLGIDELSEEDKLIVDRARKLVKFLSQPFQVAEVFTGMTGHYVQLDDTIDSFSGLLMGTYDQVPE MAFYMVGGINSVLEKAKKMAEEAAELEKMRRARVAQASS 7.1.2.2 ATP synthase gamma subunit Trypanosoma brucei brucei 0.034472254 1 LEVO MSGKLRLYKEKLEGYNRFYSIVKTIKMVTLAKYRAAQGRIRTRDFSLRYTELAFSKPQASRDAVVAAKNALVYIPITTNR GSCGALNSNIVRCIDSVVSSKMVLMPVGKRGIDSFSKLYPDEFRYGIINDMKESMHFGYATFVIENAYEVSKDADRYQVI FNRFVSAGVQRNAVYNIPSYEKWKEDLADAASSDNQKNRYLFANALQNEEEQLIRDFFDFHAALAVLNAVGENELSEQAA RLVAVEGQLTNISSLQQRTSSLYNKTRQFGITAALIEILSAMSSLEGNAMKGVRRNKFWEGAVTK 3.6.3.14 ATP synthase, epsilon chain, putative Trypanosoma brucei brucei 927/4 GUTat10.1 0.020172937999999998 1 LEVO MFRTFGRRLVSCTLPLLQSAPHDLPEGFEFMEHKVVNKDIHAPHENLETLRLTLTRQDEFLLREEPVKCVTVTGTNGEYG IYPGHAYKIVQLNPSPLTVEYTDGTTKKYFVSGGFAHINNEGSCDVNTVECTLLDDLDLAIAEKELAAQQAALGSAKDDK AKSVVEIRISVIEAVIAALKHH 3.6.3.- ATP synthase subunit epsilon, mitochondrial Trypanosoma brucei brucei 0.008706889999999998 1 LEVO MIRRSCALLSSSWRDHGISYLKYLNVCTETLHSTVKESRRAKYERWSKPCYTAQRPDGAGGQETIDKVPIHTKDY ATP synthase subunit p18, mitochondrial Trypanosoma brucei brucei 0.021268278999999998 3 LEVO MMRRVYSPVFCSVAAARFAATSAAKKYDLFGYEVDTNTAPWIEKIKKCKYYDEAGEVLVNMNVSNCPPDIATYNATLQCI YQSPSKQSTPVDNESKFCAMMDLLEEMQHRNRLKPNEESWTWVMKECVKSGQFRLGYCIQQVMETECKGCPADLVKANEA NAQKAKTEGKEHPGHLSQQAGLFDVKVE OSCP Trypanosoma brucei brucei 0.028869923999999998 1 LEVO MFRRLSSSARAVVAARFYTPPEGLKKLYASDFENSKYPLNIVPSDSVLFAKFLYKAAEEKGNFDNILSDFQKIAAAASKL PIFWERTAVVEKIPEFKQLSEPTFFTLVWMQNNGMLELIQEVAEVYETFVNAKQKKAVAKIFVAPGGEKNVEEARRVAEE LHKGLKELADYTLVLKTVVDRTIVKGFAVELAGQYVNKAEGQQKQAGRADEVDYTNLPAPKPQKTVWDDNIETEVLRKYL DGLSQYDMEEAKYGV ATPase subunit 9, putative Trypanosoma brucei brucei 927/4 GUTat10.1 0.012398870000000001 10 LEVO MMRRLALQSSIRRATPFATPLVASTKALNPMCSAITIREASTVAISVQGLHYVGTGLAAIALAGVGLGIGTIFGNLLVAC ARQPNLTKMLFNYAILGFALTEAIGLFALMLAFLMLFS 3.6.3.14 CARDIOLIPIN 0.0014640429999999997 14 CDL 1,2-Distearoyl-sn-glycerophosphoethanolamine 0.000748065 3 3PE 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 0.0007901449999999999 4 PC1 DODECYL-BETA-D-MALTOSIDE 0.000510615 2 LMT 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside 0.001165315 2 Q7G ADENOSINE-5'-TRIPHOSPHATE 0.000507181 4 ATP MAGNESIUM ION 2.4305e-05 5 MG ADENOSINE-5'-DIPHOSPHATE 0.000427201 1 ADP URIDINE 5'-TRIPHOSPHATE 0.000484141 1 UTP singleParticle particle 8.0 ETHANE 100 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 1.6 3.2 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 70.0 70.0 GATAN K2 QUANTUM (4k x 4k) COUNTING 33.0 1 3.7 FSC 0.143 CUT-OFF 17312 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_15573.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 560 560 560 0 0 0 560 560 560 464.8 464.8 464.8 90.0 90.0 90.0 X Y Z -0.082537554 0.14402364 -1.09529965e-05 0.0025054715 0.83 0.83 0.83 0.012 AUTHOR emd_15573_msk_1.map emd_15573_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 560 560 560 0 0 0 560 560 560 464.8 464.8 464.8 90.0 90.0 90.0 X Y Z -0.05930105 0.069628686 -1.0262233e-05 0.006038382 0.83 0.83 0.83 AUTHOR emd_15573_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 560 560 560 0 0 0 560 560 560 464.8 464.8 464.8 90.0 90.0 90.0 X Y Z -0.057805974 0.06799786 -1.2163506e-05 0.0061196657 0.83 0.83 0.83 AUTHOR