2024-05-15 REL PDBe PDBe PDBe 2022-07-18 2023-11-01 2023-11-01 2024-05-15 Helmholtz Association Germany Tube assembly of Atg18-WT Mann D Fromm S Martinez-Sanchez A Gopaldass N Mayer A Sachse C autophagy, membrane remodeling, PIP binding, PI3P, PI(3, 5)P2, lipid binding protein, MEMBRANE PROTEIN Mann D Fromm SA Martinez-Sanchez A Gopaldass N Choy R Mayer A Sachse C Atg18 oligomer organization in assembled tubes and on lipid membrane scaffolds. Nat Commun UK 14 8086 8086 2023 38057304 doi:10.1038/s41467-023-43460-3 2041-1723 8afw FULLOVERLAP Filament assembly of Atg18-WT Filament assembly of Atg18-WT 0 1 Saccharomyces cerevisiae Autophagy-related protein 18 Saccharomyces cerevisiae ATCC 204508 / S288c 0.05515793 4 Escherichia coli LEVO MSDSSPTINFINFNQTGTCISLGTSKGFKIFNCEPFGKFYSEDSGGYAIVEMLFSTSLLALVGIGDQPALSPRRLRIINT KKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRLLHTIETNPNPRGLMAMSPSVANSYLVYPSPPKVINSE IKAHATTNNITLSVGGNTETSFKRDQQDAGHSDISDLDQYSSFTKRDDADPTSSNGGNSSIIKNGDVIVFNLETLQPTMV IEAHKGEIAAMAISFDGTLMATASDKGTIIRVFDIETGDKIYQFRRGTYATRIYSISFSEDSQYLAVTGSSKTVHIFKLG HSMSNNKLDSDDSNMEEAAADDSSLDTTSIDALSDEENPTRLAREPYVDASRKTMGRMIRYSSQKLSRRAARTLGQIFPI KVTSLLESSRHFASLKLPVETNSHVMTISSIGSPIDIDTSEYPELFETGNSASTESYHEPVMKMVPIRVVSSDGYLYNFV MDPERGGDCLILSQYSILMD P43601 helical filament 7.2 ETHANE 99 291 LEICA EM GP TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 3.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 1812 90.0 1 19.4 70 C1 3.8 FSC 0.143 CUT-OFF cryoSPARC 133981 NOT APPLICABLE cryoSPARC emd_15410.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 540.0 540.0 540.0 90.0 90.0 90.0 X Y Z -0.42529547 1.2396239 0.022663198 0.06577432 1.35 1.35 1.35 0.25 AUTHOR sharp map from CryoSPARC software RIGID BODY FIT
Initial PDB was derived from the Atg18-PR72AA filament structure, subunits were individually docked inside the density and the PR72AA loop was manually modified in Coot
Correlation coefficient REAL emd_15410_msk_1.map emd_15410_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 540.0 540.0 540.0 90.0 90.0 90.0 X Y Z -0.45796302 0.9516626 0.007879955 0.08652279 1.35 1.35 1.35 AUTHOR half map A emd_15410_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 540.0 540.0 540.0 90.0 90.0 90.0 X Y Z -0.47086996 0.95018095 0.007863384 0.0864909 1.35 1.35 1.35 AUTHOR half map B