REL PDBe PDBe PDBe 2008-08-12 2008-08-18 2009-08-26 2012-10-24 Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome Agirrezabala X Lei J Brunelle JL Ortiz-Meoz RF Green R Frank J Classic state tRNA configuration, pre-translocational ribosome Agirrezabala X Lei J Brunelle JL Ortiz-Meoz RF Green R Frank J Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome. MOLECULAR CELL 32 190 197 2008 18951087 doi:10.1016/j.molcel.2008.10.001 Classic state pre-translocational ribosome Classic state pre-translocational ribosome
HiFi buffer, 3.5 mM Mg2
Monomeric 3 2.6 2.6 Sedimentation 70S prokaryote ribosome
Pre-translocational ribosome
false Escherichia coli MRE 600 2.6 2.6 ribosome-prokaryote: ALL singleParticle particle 0.07 7.5
HiFi (50 mM Tris-HCl pH 7.5, 70mM NH4Cl, 30 mM KCl, 3.5 mM MgCl2, 0.5 mM spermidine, 8mM putrescine, 2 mM DTT)
 NEGATIVE
Cryo-sample
Quantifoil 2/4
 NITROGEN 90 80 OTHER
Vitrification instrument: Vitrobot
Blot for 6 seconds before plunging FEI TECNAI F30 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.26 1.2 4.0 59000.0 58269.0 OTHER 80.7 80.7 80.7 Objective corrected at 100,000 times magnification No energy filter
Automated data collection system AutoEMation (CCD mag. 100000x)
2007-04-15 TVIPS TEMCAM-F415 (4k x 4k) 25
Automated data collection system AutoEMation (CCD mag. 100000x) TVIPS TemCam-F415
 Cartridge 0 0
Supervised classification
Defocus groups, Wiener filter
 C1 OTHER 10.5 FSC 0.5 CUT-OFF SPIDER
Supervised classification
57603
Spider
 1 emd_1540.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 250 250 250 0 0 0 250 250 250 375 375 375 90 90 90 X Y Z -95.952500000000001 279.004000000000019 5.23159 27.060400000000001 1.5 1.5 1.5 28.0 AUTHOR Classic configuration pre-translocational ribosome
::::EMDATABANK.org::::EMD-1540::::
 2AVY 2AW4 2J00 1GIX 1lBK RIGID BODY FIT CNS
Protocol: Real-space refinement. 1lBK(1989-1996 fragment)
REAL