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<emd emdb_id="EMD-15394" version="3.0.2.8">
    <admin>
        <current_status>
            <date>2023-01-11</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2022-07-16</deposition>
            <header_release>2023-01-11</header_release>
            <map_release>2023-01-11</map_release>
            <update>2023-01-11</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>Other government</funding_body>
            </grant_reference>
        </grant_support>
        <title>Cell-cell contact between two PTK-1 cells</title>
        <authors_list>
            <author>Bezault A</author>
            <author>Sauvanet C</author>
            <author>Lemos M</author>
            <author>Hanein D</author>
            <author>Volkmann N</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Dow LP</author>
                    <author ORCID="0000-0003-2455-1264" order="2">Gaietta G</author>
                    <author order="3">Kaufman Y</author>
                    <author ORCID="0000-0001-5663-0798" order="4">Swift MF</author>
                    <author ORCID="0000-0002-7986-9053" order="5">Lemos M</author>
                    <author order="6">Lane K</author>
                    <author order="7">Hopcroft M</author>
                    <author ORCID="0000-0002-6127-692X" order="8">Bezault A</author>
                    <author ORCID="0000-0003-2850-3833" order="9">Sauvanet C</author>
                    <author ORCID="0000-0003-1328-6426" order="10">Volkmann N</author>
                    <author ORCID="0000-0002-4861-2124" order="11">Pruitt BL</author>
                    <author ORCID="0000-0002-6072-4946" order="12">Hanein D</author>
                    <title>Morphological control enables nanometer-scale dissection of cell-cell signaling complexes.</title>
                    <journal_abbreviation>Nat Commun</journal_abbreviation>
                    <country>UK</country>
                    <volume>13</volume>
                    <first_page>7831</first_page>
                    <last_page>7831</last_page>
                    <year>2022</year>
                    <external_references type="PUBMED">36539423</external_references>
                    <external_references type="DOI">doi:10.1038/s41467-022-35409-9</external_references>
                    <external_references type="ISSN">2041-1723</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-15394</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>cell-cell contact</name>
        <supramolecule_list>
            <cell_supramolecule supramolecule_id="1">
                <name>cell-cell contact</name>
                <parent>0</parent>
                <details>cell-cell contact between two PTK-1 cells</details>
                <natural_source database="NCBI">
                    <organism ncbi="9310">Potorous tridactylus</organism>
                </natural_source>
            </cell_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>tomography</method>
            <aggregation_state>cell</aggregation_state>
            <specimen_preparation_list>
                <tomography_preparation preparation_id="1">
                    <buffer>
                        <ph>6.9</ph>
                    </buffer>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                    </vitrification>
                    <sectioning>
                        <other_sectioning>NO SECTIONING</other_sectioning>
                    </sectioning>
                </tomography_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <tomography_microscopy microscopy_id="1">
                    <microscope>TFS GLACIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <nominal_defocus_min units="µm">10.0</nominal_defocus_min>
                    <nominal_defocus_max units="µm">10.0</nominal_defocus_max>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI FALCON III (4k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">3.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </tomography_microscopy>
            </microscopy_list>
            <tomography_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <number_images_used>35</number_images_used>
                </final_reconstruction>
            </tomography_processing>
        </structure_determination>
    </structure_determination_list>
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        <file>emd_15394.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS SIGNED BYTE</data_type>
        <dimensions>
            <col>2048</col>
            <row>2048</row>
            <sec>232</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>89</sec>
        </origin>
        <spacing>
            <x>2048</x>
            <y>2048</y>
            <z>232</z>
        </spacing>
        <cell>
            <a units="Å">16617.473</a>
            <b units="Å">16617.473</b>
            <c units="Å">1882.4481</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-128.0</minimum>
            <maximum>127.0</maximum>
            <average>6.7312713</average>
            <std>15.179936</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">8.114</x>
            <y units="Å">8.114</y>
            <z units="Å">8.114</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-15394::::</label>
        <annotation_details>Raw tomographic reconstruction of a cryo-FIB lamella through a cell-cell contact of two PTK-1 cells. "Contour level" is a placeholder. Use "Auto" button in IMOD.</annotation_details>
    </map>
</emd>
