2022-11-23 REL PDBe PDBe PDBe 2022-07-11 2022-11-02 2022-11-02 2022-11-23 European Molecular Biology Organization (EMBO) ALTF 79-2019 European Union European Research Council (ERC) TENDO European Union Cryo-EM structure of the SEA complex (protomer focused map) Tafur L Loewith R Tafur L Hinterndorfer K Gabus C Lamanna C Bergmann A Sadian Y Hamdi F Kyrilis FL Kastritis PL Loewith R Cryo-EM structure of the SEA complex. Nature UK 611 399 404 2022 36289347 doi:10.1038/s41586-022-05370-0 1476-4687 0006 NATUAS EMD-15364 other EM volume
Full consensus map
 EMD-15373 associated EM volume SEA complex protomer (SEACAT) SEA complex protomer (SEACAT) 0 1 2 3 4 5 6 7 8 9 10 11
Focused reconstruction on SEAC core protomer with C2-symmetry expanded particles
Saccharomyces cerevisiae singleParticle particle 7.4 ETHANE 90 283 LEICA EM GP FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.6 1.6 TFS Selectris X 10 FEI FALCON IV (4k x 4k) 40.0 1 cryoSPARC 3.3.2 Patch CTF correction
Ab initio map
 C1 2.81 FSC 0.143 CUT-OFF cryoSPARC 3.3.2
C2-symmetry expanded particles. Focused alignment using a mask on protomer.
416670 RANDOM ASSIGNMENT cryoSPARC 3.3.2 Ab initio job
Ab initio map
 MAXIMUM LIKELIHOOD cryoSPARC 3.3.2 Non-uniform refinement
Non-uniform refinement
 emd_15373.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 640 640 640 0 0 0 640 640 640 464.64 464.64 464.64 90.0 90.0 90.0 X Y Z -0.0017270134 1.849637 0.0010532469 0.019328423 0.726 0.726 0.726 0.05 AUTHOR DeepEMhancer sharpened map 3F3F A 3MZK A AB INITIO MODEL
AlphaFold predictions were used as starting models for Sea1, Sea2, Sea3, Sea4, Npr2 and Npr3. Rigid body fit was performed in Chimera, and manual building in Coot.
REAL emd_15373_msk_1.map emd_15373_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 640 640 640 0 0 0 640 640 640 464.64 464.64 464.64 90.0 90.0 90.0 X Y Z -0.0017270134 2.126075 0.0010525709 0.020504626 0.726 0.726 0.726 AUTHOR Non-resampled DeepEMhancer sharpened map emd_15373_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 640 640 640 0 0 0 640 640 640 464.64 464.64 464.64 90.0 90.0 90.0 X Y Z -0.8913474 0.8938636 0.00061761617 0.09531279 0.726 0.726 0.726 AUTHOR emd_15373_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 640 640 640 0 0 0 640 640 640 464.64 464.64 464.64 90.0 90.0 90.0 X Y Z -0.8197348 0.8068428 0.0006113844 0.09529313 0.726 0.726 0.726 AUTHOR