<emd emdb_id="EMD-1536" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2008-07-21</deposition>
            <header_release>2008-07-22</header_release>
            <map_release>2010-11-05</map_release>
            <update>2010-11-09</update>
        </key_dates>
        <title>ESCRT-III subunits CHMP2A and CHMP3 assemble in vitro into helical tubular structures</title>
        <authors_list>
            <author>Lata S</author>
            <author>Schoehn G</author>
            <author>Jain A</author>
            <author>Pires R</author>
            <author>Piehler J</author>
            <author>Goettlinger H</author>
            <author>Weissenhorn W</author>
        </authors_list>
        <keywords>helical reconstruction</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Lata S</author>
                    <author order="2">Schoehn G</author>
                    <author order="3">Jain A</author>
                    <author order="4">Pires R</author>
                    <author order="5">Piehler J</author>
                    <author order="6">Gottlinger HG</author>
                    <author order="7">Weissenhorn W</author>
                    <title>Helical structures of ESCRT-III are disassembled by VPS4.</title>
                    <journal>SCIENCE</journal>
                    <volume>321</volume>
                    <first_page>1354</first_page>
                    <last_page>1357</last_page>
                    <year>2008</year>
                    <external_references type="PUBMED">18687924</external_references>
                    <external_references type="DOI">doi:10.1126/science.1161070</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
    </crossreferences>
    <sample>
        <name>CHMP proteins</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>CHMP proteins</name>
                <oligomeric_state>oligomer of dimers</oligomeric_state>
                <number_unique_components>1</number_unique_components>
            </sample_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name synonym="CHMP">CHMP</name>
                <natural_source database="NCBI">
                    <organism ncbi="4930">Saccharomyces</organism>
                    <synonym_organism>Yeast</synonym_organism>
                    <cell>E coli</cell>
                </natural_source>
                <details>CHMP2AdeltaC (9-161)-CHMP3deltaC(9 to 183) . MBP attached to CHMP2AdeltaC</details>
                <oligomeric_state>oligomer of dimers</oligomeric_state>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                    <recombinant_plasmid>pETM40</recombinant_plasmid>
                </recombinant_expression>
                <sequence />
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>helical</method>
            <aggregation_state>filament</aggregation_state>
            <specimen_preparation_list>
                <helical_preparation preparation_id="1">
                    <concentration units="mg/mL">1</concentration>
                    <buffer>
                        <ph>7.6</ph>
                        <details>20 mM HEPES, pH 7.6, 150 mM NaCl</details>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <details>Vitrified samples were prepared according to the method of Dubochet et al.,</details>
                    </staining>
                    <grid>
                        <details>Quantifoil R2/2</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_temperature units="K">100</chamber_temperature>
                        <instrument>OTHER</instrument>
                        <details>Vitrification instrument: Zeiss</details>
                        <method>Blot for 2 seconds before plunging</method>
                    </vitrification>
                </helical_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <helical_microscopy microscopy_id="1">
                    <microscope>FEI/PHILIPS CM200T</microscope>
                    <illumination_mode>OTHER</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>LAB6</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <nominal_cs units="mm">2</nominal_cs>
                    <nominal_defocus_min units="&#181;m">1.2</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">2.5</nominal_defocus_max>
                    <nominal_magnification>38000.0</nominal_magnification>
                    <calibrated_magnification>39500.0</calibrated_magnification>
                    <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
                    <temperature>
                        <temperature_average units="K">100</temperature_average>
                    </temperature>
                    <alignment_procedure>
                        <legacy>
                            <astigmatism>orrected at 100,000 times magnification</astigmatism>
                        </legacy>
                    </alignment_procedure>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                            <digitization_details>
                                <scanner>ZEISS SCAI</scanner>
                                <sampling_interval units="&#181;m">7</sampling_interval>
                            </digitization_details>
                            <number_real_images>10</number_real_images>
                            <average_electron_dose_per_image units="e/&#8491;^2">10</average_electron_dose_per_image>
                            <details>Images binned after scanning</details>
                            <bits_per_pixel>8.</bits_per_pixel>
                        </image_recording>
                    </image_recording_list>
                    <specimen_holder>Eucentric</specimen_holder>
                </helical_microscopy>
            </microscopy_list>
            <helical_processing image_processing_id="1">
                <details>Particles were selected by hand using X3d</details>
                <final_reconstruction>
                    <applied_symmetry>
                        <helical_parameters>
                            <delta_z units="&#8491;">32</delta_z>
                            <delta_phi units="deg">21.71</delta_phi>
                        </helical_parameters>
                    </applied_symmetry>
                    <algorithm>OTHER</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">32.0</resolution>
                    <resolution_method>OTHER</resolution_method>
                    <software_list>
                        <software>
                            <name>IHRSR</name>
                        </software>
                    </software_list>
                    <details>2500 out of 4400 particles have been used</details>
                </final_reconstruction>
                <ctf_correction>
                    <details>each particle</details>
                </ctf_correction>
            </helical_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="54001">
        <file>emd_1536.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>240</col>
            <row>240</row>
            <sec>240</sec>
        </dimensions>
        <origin>
            <col>-120</col>
            <row>-120</row>
            <sec>-120</sec>
        </origin>
        <spacing>
            <x>240</x>
            <y>240</y>
            <z>240</z>
        </spacing>
        <cell>
            <a units="&#8491;">840</a>
            <b units="&#8491;">840</b>
            <c units="&#8491;">840</c>
            <alpha units="deg">90</alpha>
            <beta units="deg">90</beta>
            <gamma units="deg">90</gamma>
        </cell>
        <axis_order>
            <fast>Z</fast>
            <medium>X</medium>
            <slow>Y</slow>
        </axis_order>
        <statistics>
            <minimum>0.0</minimum>
            <maximum>0.00327867</maximum>
            <average>0.000164445</average>
            <std>0.000481635</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">3.5</x>
            <y units="&#8491;">3.5</y>
            <z units="&#8491;">3.5</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.0017</level>
                <source>EMDB</source>
            </contour>
        </contour_list>
        <annotation_details>ESCRT-III subunits CHMP2A and CHMP3 assemble in vitro into helical tubular structures</annotation_details>
        <details>::::EMDATABANK.org::::EMD-1536::::</details>
    </map>
</emd>