2022-10-19 REL PDBe PDBe PDBe 2022-07-05 2022-10-19 2022-10-19 2022-10-19 Novo Nordisk Foundation NNF0024386 Denmark Novo Nordisk Foundation NNF14CC0001 Denmark Novo Nordisk Foundation NNF17SA0030214 Denmark Novo Nordisk Foundation NNF18OC0055061 Denmark Type V-K CAST TnsB bound to LTR-SR Tenjo-Castano F Sofos N Lopez-Mendez B Stutzke LS Fuglsang A Stella S Montoya G Tenjo-Castano F Sofos N Lopez-Mendez B Stutzke LS Fuglsang A Stella S Montoya G Structure of the TnsB transposase-DNA complex of type V-K CRISPR-associated transposon. Nat Commun UK 13 5792 5792 2022 36184667 doi:10.1038/s41467-022-33504-5 2041-1723 EMD-15294 other EM volume EMD-15344 associated EM volume Type V-K CAST TnsB bound to LTR-SR Type V-K CAST TnsB bound to LTR-SR 0 1 2 3 Scytonema hofmannii Escherichia coli 0.359 TnsB Scytonema hofmannii Escherichia coli LEVO MNSQQNPDLAVHPLAIPMEGLLGESATTLEKNVIATQLSEEAQVKLEVIQSLLEPCDRTTYGQKLREAAEKLNVSLRTVQRLVKNWEQDGLVGLTQTSRADKGKHRIGEFWEN FITKTYKEGNKGSKRMTPKQVALRVEAKARELKDSKPPNYKTVLRVLAPILEKQQKAKSIRSPGWRGTTLSVKTREGKDLSVDYSNHVWQCDHTRVDVLLVDQHGEILSRPWLT TVIDTYSRCIMGINLGFDAPSSGVVALALRHAILPKRYGSEYKLHCEWGTYGKPEHFYTDGGKDFRSNHLSQIGAQLGFVCHLRDRPSEGGVVERPFKTLNDQLFSTLPGYTGSN VQERPEDAEKDARLTLRELEQLLVRYIVDRYNQSIDARMGDQTRFERWEAGLPTVPVPIPERDLDICLMKQSRRTVQRGGCLQFQNLMYRGEYLAGYAGETVNLRFDPRDITTI LVYRQENNQEVFLTRAHAQGLETEQLALDEAEAASRRLRTAGKTISNQSLLQEVVDRDALVATKKSRKERQKLEQTVLRSAAVDESNRESLPSQIVEPDEVESTETVHSQYEDIEVWDYEQLREEYGFGSEFELENLYFQ RightElement Scytonema hofmannii TGCTACGTCTCTACGTGTACAGTGACTAATTATATGTCGTTGTGACAAATTATTGTCATCAGTAAAATCCTTATACAGTATAGATTATAGCGCTTTGGCAGTTTTAGCATAACCTCTTTGCAGTGACAAAATAGATGTCGTTGTCCGTGATTGTGACAAATTAGCTGTCGCTTTGCAAGATAGGAAAAAGCTTTTGTGTATTTTCATAATGACAAATTGACTGTCGCAGGAGGTAA DNA LeftElement Scytonema hofmannii ATTATATTGATGACATTTAATTTGTCATCAATTAATTAAGCAACGCTGATGGGTCACGACGACAATTAAATAGTCACAATGACATTAATCTGTCACCGACGACAGATAATTTGTCACTGTACACTACGCCTTTTGTGG DNA singleParticle particle 7.5 300.0 NaCl sodium chloride 50.0 HEPES 2-[4-(2-hydroxyethyl)piperazin-1-yl]ethanesulfonic acid 5.0 MgCl2 magnesium chloride 1.0 TCEP Tris(2-carboxyethyl)phosphine ETHANE 100 277 FEI VITROBOT MARK IV TFS GLACIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 70.0 2.7 0.9 2.5 150000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON III (4k x 4k) COUNTING 1 738 40.0 40.0 1 38871 cryoSPARC 3.3.2
Ab initio reconstruction in cryoSPARC from the same data.
 C1 BACK PROJECTION 11.2 FSC 0.143 CUT-OFF cryoSPARC 3.3.2 5554 MAXIMUM LIKELIHOOD cryoSPARC 3.3.2 MAXIMUM LIKELIHOOD cryoSPARC 3.3.2 emd_15344.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 392.0 392.0 392.0 90.0 90.0 90.0 X Y Z -0.13324593 0.46563247 -1.9994433e-05 0.013075983 0.98 0.98 0.98 0.0504 AUTHOR AB INITIO MODEL REAL emd_15344_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 392.0 392.0 392.0 90.0 90.0 90.0 X Y Z -0.2942046 0.54302454 0.00039297086 0.027702529 0.98 0.98 0.98 AUTHOR emd_15344_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 392.0 392.0 392.0 90.0 90.0 90.0 X Y Z -0.304869 0.5207347 0.00033448462 0.027423106 0.98 0.98 0.98 AUTHOR