2024-07-24 REL PDBe PDBe PDBe 2022-06-30 2022-10-19 2022-10-19 2024-07-24 Novo Nordisk Foundation NNF0024386 Denmark Novo Nordisk Foundation NNF14CC0001 Denmark Novo Nordisk Foundation NNF17SA0030214 Denmark Novo Nordisk Foundation NNF18OC0055061 Denmark Cryo-EM structure of the strand transfer complex of the TnsB transposase (type V-K CRISPR-associated transposon) Tenjo-Castano F Sofos N Lopez-Mendez B Stutzke LS Fuglsang A Stella S Montoya G Transposase, complex, CRISPR, transposition, DNA cleavage, ligation, DNA BINDING PROTEIN Tenjo-Castano F Sofos N Lopez-Mendez B Stutzke LS Fuglsang A Stella S Montoya G Structure of the TnsB transposase-DNA complex of type V-K CRISPR-associated transposon. Nat Commun UK 13 5792 5792 2022 36184667 doi:10.1038/s41467-022-33504-5 2041-1723 8aa5 FULLOVERLAP Ternary complex of ShTnsB transposase with Strand Transfer Complex DNA. Ternary complex of ShTnsB transposase with Strand Transfer Complex DNA. 0 1 2 3 4 5 6 7 Scytonema hofmannii 0.359 TnsB Scytonema hofmannii 0.068094609 4 Escherichia coli LEVO MNSQQNPDLAVHPLAIPMEGLLGESATTLEKNVIATQLSEEAQVKLEVIQSLLEPCDRTTYGQKLREAAEKLNVSLRTVQ RLVKNWEQDGLVGLTQTSRADKGKHRIGEFWENFITKTYKEGNKGSKRMTPKQVALRVEAKARELKDSKPPNYKTVLRVL APILEKQQKAKSIRSPGWRGTTLSVKTREGKDLSVDYSNHVWQCDHTRVDVLLVDQHGEILSRPWLTTVIDTYSRCIMGI NLGFDAPSSGVVALALRHAILPKRYGSEYKLHCEWGTYGKPEHFYTDGGKDFRSNHLSQIGAQLGFVCHLRDRPSEGGVV ERPFKTLNDQLFSTLPGYTGSNVQERPEDAEKDARLTLRELEQLLVRYIVDRYNQSIDARMGDQTRFERWEAGLPTVPVP IPERDLDICLMKQSRRTVQRGGCLQFQNLMYRGEYLAGYAGETVNLRFDPRDITTILVYRQENNQEVFLTRAHAQGLETE QLALDEAEAASRRLRTAGKTISNQSLLQEVVDRDALVATKKSRKERQKLEQTVLRSAAVDESNRESLPSQIVEPDEVEST ETVHSQYEDIEVWDYEQLREEYGFGSEFELENLYFQ RE_Target Scytonema hofmannii 0.024402717 1 (DA)(DT)(DA)(DA)(DG)(DG)(DA)(DT)(DT)(DT)(DT)(DA)(DC)(DT)(DG)(DA)(DT)(DG)(DA)(DC) (DA)(DA)(DT)(DA)(DA)(DT)(DT)(DT)(DG)(DT)(DC)(DA)(DC)(DA)(DA)(DC)(DG)(DA)(DC)(DA) (DT)(DA)(DT)(DA)(DA)(DT)(DT)(DA)(DG)(DT)(DC)(DA)(DC)(DT)(DG)(DT)(DA)(DC)(DA)(DC) (DG)(DT)(DA)(DG)(DA)(DG)(DA)(DC)(DG)(DT)(DA)(DG)(DC)(DA)(DA)(DT)(DG)(DC)(DT) DNA RE_PolyA Scytonema hofmannii 0.022876809 1 (DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DT)(DG)(DT)(DA)(DC) (DA)(DG)(DT)(DG)(DA)(DC)(DT)(DA)(DA)(DT)(DT)(DA)(DT)(DA)(DT)(DG)(DT)(DC)(DG)(DT) (DT)(DG)(DT)(DG)(DA)(DC)(DA)(DA)(DA)(DT)(DT)(DA)(DT)(DT)(DG)(DT)(DC)(DA)(DT)(DC) (DA)(DG)(DT)(DA)(DA)(DA)(DA)(DT)(DC)(DC)(DT)(DT)(DA)(DT) DNA Target_1 Scytonema hofmannii 0.0045599709999999995 1 (DA)(DG)(DC)(DA)(DT)(DT)(DG)(DC)(DT)(DA)(DC)(DG)(DT)(DC)(DT) DNA LE_Target Scytonema hofmannii 0.02463483 1 (DA)(DA)(DT)(DT)(DA)(DA)(DA)(DT)(DA)(DG)(DT)(DC)(DA)(DC)(DA)(DA)(DT)(DG)(DA)(DC) (DA)(DT)(DT)(DA)(DA)(DT)(DC)(DT)(DG)(DT)(DC)(DA)(DC)(DC)(DG)(DA)(DC)(DG)(DA)(DC) (DA)(DG)(DA)(DT)(DA)(DA)(DT)(DT)(DT)(DG)(DT)(DC)(DA)(DC)(DT)(DG)(DT)(DA)(DC)(DA) (DC)(DT)(DA)(DC)(DG)(DC)(DC)(DT)(DT)(DT)(DT)(DG)(DT)(DG)(DG)(DA)(DG)(DA)(DT)(DG) DNA LE_PolyA Scytonema hofmannii 0.023238008 1 (DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DT)(DG)(DT)(DA)(DC) (DA)(DG)(DT)(DG)(DA)(DC)(DA)(DA)(DA)(DT)(DT)(DA)(DT)(DC)(DT)(DG)(DT)(DC)(DG)(DT) (DC)(DG)(DG)(DT)(DG)(DA)(DC)(DA)(DG)(DA)(DT)(DT)(DA)(DA)(DT)(DG)(DT)(DC)(DA)(DT) (DT)(DG)(DT)(DG)(DA)(DC)(DT)(DA)(DT)(DT)(DT)(DA)(DA)(DT)(DT) DNA Target_2 Scytonema hofmannii 0.00454699 1 (DC)(DA)(DT)(DC)(DT)(DC)(DC)(DA)(DC)(DA)(DA)(DA)(DA)(DG)(DG) DNA water 1.8015e-05 2 HOH singleParticle particle 3.8 7.5 300.0 NaCl sodium chloride 50.0 HEPES 2-[4-(2-hydroxyethyl)piperazin-1-yl]ethanesulfonic acid 5.0 MgCl2 magnesium chloride 1.0 TCEP Tris(2-carboxyethyl)phosphine UltrAuFoil R1.2/1.3 GOLD 300 GLOW DISCHARGE AIR ETHANE 100 277 FEI VITROBOT MARK IV TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 0.8 2.0 96000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON III (4k x 4k) COUNTING 1 4728 40.0 40.0 1 9646000
Ab initio reconstruction in cryoSPARC from the same data.
 1 C1 2.46 FSC 0.143 CUT-OFF cryoSPARC 3.3.2 208000 MAXIMUM LIKELIHOOD cryoSPARC 3.3.2 MAXIMUM LIKELIHOOD cryoSPARC 3.3.2 2 130000.0 cryoSPARC 3.3.2 emd_15294.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 178 142 115 108 141 147 115 142 178 95.68 118.144005 148.09601 90.0 90.0 90.0 Z Y X -0.0017501548 1.8244389 0.01577485 0.080284886 0.832 0.832 0.832 0.06 AUTHOR Map post-processed using DeepEMhancer and boxed out using Phenix. AB INITIO MODEL REAL emd_15294_msk_1.map emd_15294_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 416 416 416 0 0 0 416 416 416 346.112 346.112 346.112 90.0 90.0 90.0 X Y Z -1.3319861 2.506456 0.00086669 0.059515327 0.832 0.832 0.832 AUTHOR emd_15294_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 416 416 416 0 0 0 416 416 416 346.112 346.112 346.112 90.0 90.0 90.0 X Y Z -1.4048196 2.5320706 0.00086472475 0.05944744 0.832 0.832 0.832 AUTHOR