<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1527" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2008-06-23</deposition>
         <header_release>2008-06-24</header_release>
         <map_release>2009-04-02</map_release>
         <update>2012-10-24</update>
      </key_dates>
      <title>The structure of phosphorylase kinase holoenzyme at 9.9 A resolution and location of the catalytic subunit and the substrate glycogen phosphorylase</title>
      <authors_list>
         <author>Venien-Bryan C</author>
         <author>Jonic S</author>
         <author>Skamnaki V</author>
         <author>Brown N</author>
         <author>Bishler N</author>
         <author>Oikonomakos NG</author>
         <author>Boisset N</author>
         <author>Johnson LN</author>
      </authors_list>
      <keywords>Phosphorylase kinase</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Venien-Bryan C</author>
               <author order="2">Jonic S</author>
               <author order="3">Skamnaki V</author>
               <author order="4">Brown N</author>
               <author order="5">Bischler N</author>
               <author order="6">Oikonomakos NG</author>
               <author order="7">Boisset N</author>
               <author order="8">Johnson LN</author>
               <title>The structure of phosphorylase kinase holoenzyme at 9.9 angstroms resolution and location of the catalytic subunit and the substrate glycogen phosphorylase.</title>
               <journal>STRUCTURE</journal>
               <volume>17</volume>
               <first_page>117</first_page>
               <last_page>127</last_page>
               <year>2009</year>
               <external_references type="PUBMED">19141288</external_references>
               <external_references type="DOI">doi:10.1016/j.str.2008.10.013</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Phosphorylase kinase holoenzyme purified from rabbit muscle</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Phosphorylase kinase holoenzyme purified from rabbit muscle</name>
            <oligomeric_state>hexadecamer assembly of four different subunits arranged as an (abgd)4 tetramer</oligomeric_state>
            <number_unique_components>4</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">1.3</experimental>
               <theoretical units="MDa">1.3</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="PhK">Phosphorylase kinase</name>
            <natural_source database="NCBI">
               <organism ncbi="9986">Oryctolagus cuniculus</organism>
               <synonym_organism>Rabbit</synonym_organism>
               <tissue>muscle</tissue>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">1.3</experimental>
               <theoretical units="MDa">1.3</theoretical>
            </molecular_weight>
            <number_of_copies>4</number_of_copies>
            <oligomeric_state>hexadecamer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">1.0</concentration>
               <buffer>
                  <ph>8.199999999999999</ph>
                  <details>100mM NaCl, 0.3 mM CaCl2, 5mM  MgCl2, 50 mM Hepes, pH 8.2</details>
               </buffer>
               <grid>
                  <details>400-mesh copper grid coated with a thin holey-carbon film</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <instrument>HOMEMADE PLUNGER</instrument>
                  <details>Vitrification instrument: Manual. 5 microL were applied on a 200 mesh copper grid, coated with a thin holey carbon film. After blotting the excess of solution with Whatman paper, the grid was rapidly plunged into liquid ethane</details>
                  <method>Single-sided blotting</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>JEOL 2010UHR</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_cs units="mm">0.5</nominal_cs>
               <nominal_defocus_min units="&#181;m">2.8</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">4.8</nominal_defocus_max>
               <nominal_magnification>50000.0</nominal_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <temperature>
                  <temperature_min units="K">91.15</temperature_min>
                  <temperature_max units="K">93.15</temperature_max>
                  <temperature_average units="K">93.15</temperature_average>
               </temperature>
               <details>low dose illumination</details>
               <date>2005-04-13</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>NIKON SUPER COOLSCAN 9000</scanner>
                        <sampling_interval units="&#181;m">2.07</sampling_interval>
                     </digitization_details>
                     <number_real_images>98</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">10</average_electron_dose_per_image>
                     <bits_per_pixel>8.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Gatan</specimen_holder>
               <tilt_angle_min>0</tilt_angle_min>
               <tilt_angle_max>0</tilt_angle_max>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>The particles were selected using an automatic selection program</details>
            <ctf_correction>
               <details>Wiener filtration of volumes from focal series</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>D2</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">9.9</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>SPIDER</name>
                  </software>
               </software_list>
               <details>Final map was calculated using five groups of defocus</details>
               <number_images_used>18123</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="22783">
      <file>emd_1527.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>180</col>
         <row>180</row>
         <sec>180</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>180</x>
         <y>180</y>
         <z>180</z>
      </spacing>
      <cell>
         <a units="&#8491;">372.6</a>
         <b units="&#8491;">372.6</b>
         <c units="&#8491;">372.6</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.0273353</minimum>
         <maximum>0.0300857</maximum>
         <average>0.0000545086</average>
         <std>0.00140281</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">2.07</x>
         <y units="&#8491;">2.07</y>
         <z units="&#8491;">2.07</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.000757</level>
         </contour>
      </contour_list>
      <annotation_details>3D map of PhK</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1527::::</details>
   </map>
   <interpretation>
      <modelling_list>
         <modelling>
            <initial_model>
               <access_code>2PHK</access_code>
            </initial_model>
            <refinement_protocol>RIGID BODY FIT</refinement_protocol>
            <software_list>
               <software>
                  <name>Situs</name>
               </software>
            </software_list>
            <details>Protocol: rigid body</details>
            <target_criteria>cross correlation coefficient</target_criteria>
            <refinement_space>RECIPROCAL</refinement_space>
         </modelling>
      </modelling_list>
   </interpretation>
</emd>