<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1526" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2008-06-20</deposition>
         <header_release>2008-06-23</header_release>
         <map_release>2009-04-02</map_release>
         <update>2012-10-24</update>
      </key_dates>
      <title>Single particle reconstruction of Methanothermobacter thermautotrophicus MCM protein bound to a 5,600bp dsDNA fragment.</title>
      <authors_list>
         <author>Costa A</author>
         <author>van Duinen G</author>
         <author>Medagli B</author>
         <author>Chong J</author>
         <author>Sakakibara N</author>
         <author>Kelman Z</author>
         <author>Nair SK</author>
         <author>Patwardhan A</author>
         <author>Onesti S</author>
      </authors_list>
      <keywords>helicase,AAA+ ATPase, DNA replication</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Costa A</author>
               <author order="2">van Duinen G</author>
               <author order="3">Medagli B</author>
               <author order="4">Chong J</author>
               <author order="5">Sakakibara N</author>
               <author order="6">Kelman Z</author>
               <author order="7">Nair SK</author>
               <author order="8">Patwardhan A</author>
               <author order="9">Onesti S</author>
               <title>Cryo-electron microscopy reveals a novel DNA-binding site on the MCM helicase.</title>
               <journal>EMBO J.</journal>
               <volume>27</volume>
               <first_page>2250</first_page>
               <last_page>2258</last_page>
               <year>2008</year>
               <external_references type="PUBMED">18650940</external_references>
               <external_references type="DOI">doi:10.1038/emboj.2008.135</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Methanothermobacter thermautotrophicus MCM protein bound to a 5,600 bp dsDNA fragment</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Methanothermobacter thermautotrophicus MCM protein bound to a 5,600 bp dsDNA fragment</name>
            <oligomeric_state>One homohexamer of MCM binds to one dsDNA fragment</oligomeric_state>
            <number_unique_components>2</number_unique_components>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <dna macromolecule_id="1">
            <name synonym="5,600 bp pET15b vector fragment">DNA</name>
            <natural_source database="NCBI">
               <organism ncbi="32630">synthetic construct</organism>
            </natural_source>
            <classification>DNA</classification>
            <structure>DOUBLE HELIX</structure>
            <synthetic_flag>false</synthetic_flag>
         </dna>
         <protein_or_peptide macromolecule_id="2">
            <name synonym="MCM">Mini-chromosome Maintenance complex</name>
            <natural_source database="NCBI">
               <organism ncbi="187420">Methanothermobacter thermautotrophicus str. Delta H</organism>
               <strain>Delta H</strain>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.45</theoretical>
            </molecular_weight>
            <number_of_copies>6</number_of_copies>
            <oligomeric_state>Hexamer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.012</concentration>
               <buffer>
                  <ph>7.5</ph>
                  <details>30mM Tris HCl pH 7.5, 50 mM NaCl, 5mM MgCl2, 5 mM beta-mercaptoethanol</details>
               </buffer>
               <grid>
                  <details>Quantifoil R 1.2/1.3</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">100</chamber_humidity>
                  <chamber_temperature units="K">4.5</chamber_temperature>
                  <instrument>OTHER</instrument>
                  <details>Vitrification instrument: FEI Vitrobot plunger</details>
                  <method>Blot for 2.5 seconds at an offset of -1 before plunging</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI/PHILIPS CM200FEG</microscope>
               <illumination_mode>SPOT SCAN</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_defocus_min units="&#181;m">0.7</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">2.5</nominal_defocus_max>
               <nominal_magnification>50000.0</nominal_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <image_recording_list>
                  <image_recording>
                     <digitization_details>
                        <scanner>OTHER</scanner>
                        <sampling_interval units="&#181;m">6.5</sampling_interval>
                     </digitization_details>
                     <number_real_images>22</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">17</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Side entry liquid nitrogen-cooled cryo specimen holder.</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>Particles were selected automatically using Boxer on defocal pair images</details>
            <ctf_correction>
               <details>Each particle</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">19.0</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>IMAGIC-5</name>
                  </software>
               </software_list>
               <number_images_used>10010</number_images_used>
            </final_reconstruction>
            <final_angle_assignment>
               <details>beta 0 degrees, gamma 90 degrees</details>
            </final_angle_assignment>
            <final_two_d_classification>
               <number_classes>800</number_classes>
            </final_two_d_classification>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="3351">
      <file>emd_1526.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>95</col>
         <row>95</row>
         <sec>95</sec>
      </dimensions>
      <origin>
         <col>-46</col>
         <row>-47</row>
         <sec>-47</sec>
      </origin>
      <spacing>
         <x>95</x>
         <y>95</y>
         <z>95</z>
      </spacing>
      <cell>
         <a units="&#8491;">332.8</a>
         <b units="&#8491;">332.8</b>
         <c units="&#8491;">332.8</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.721348</minimum>
         <maximum>0.569189</maximum>
         <average>0.00198268</average>
         <std>0.0751419</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">2.6</x>
         <y units="&#8491;">2.6</y>
         <z units="&#8491;">2.6</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.135</level>
         </contour>
      </contour_list>
      <annotation_details>This is an electron density map of the MthMCM helicase treated with a 5,600 bp dsDNA fragment.</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1526::::</details>
   </map>
   <interpretation>
      <figure_list>
         <figure>
            <file>emd_1526.png</file>
         </figure>
      </figure_list>
   </interpretation>
</emd>