2024-06-19 REL PDBe PDBe PDBe 2022-06-20 2023-12-20 2023-12-20 2024-06-19 German Federal Ministry for Education and Research Germany German Federal Ministry for Education and Research 03Z22HI2 Germany German Federal Ministry for Education and Research 03COV04 Germany German Research Foundation (DFG) 391498659 Germany European Regional Development Fund EFRE: ZS/2016/04/78115 European Union Asymmetric reconstruction of averaged ribosomes from Saccharomyces cerevisiae Schmidt L Tueting C Kyrilis F Hamdi F Semchonok DA Kastritis PL ribosome, replication, active translation, ribosomal states, polysomes Schmidt L Tuting C Kyrilis FL Hamdi F Semchonok DA Hause G Meister A Ihling C Stubbs MT Sinz A Kastritis PL Delineating organizational principles of the endogenous L-A virus by cryo-EM and computational analysis of native cell extracts. Commun Biol UK 7 557 557 2024 38730276 doi:10.1038/s42003-024-06204-7 2399-3642 Schmidt L Tuting C Kyrilis FL Hamdi F Semchonok DA Hause G Meister A Ihling C Shah PNM Stubbs MT Sinz A Stuart DI Kastritis PL Delineating organizational principles of the endogenous L-A virus by cryo-EM and computational analysis of native cell extracts Biorxiv US 2022 doi:10.1101/2022.07.15.498668 2692-8205 Saccharomyces cerevisiae ribosomes Saccharomyces cerevisiae ribosomes 0 Saccharomyces cerevisiae singleParticle particle 0.3 7.4 200.0 CH3COONH4 Ammoniumacetate
pH of the buffer was adjusted with NaOH buffer was filtered and sonicated
 Quantifoil R2/1 COPPER CARBON HOLEY ARRAY GLOW DISCHARGE AIR 0.04 ETHANE 95 277.15 FEI VITROBOT MARK IV
blot force 2 and blot time 6 before plunging.
heterogenous cell extract
 TFS GLACIOS OTHER BRIGHT FIELD FIELD EMISSION GUN 200 70.0 2.7 1.0 2.0 45000.0 44067.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 77.0 118.0 FEI FALCON III (4k x 4k) 4096 4096 7 2728 3.61 30.0 1 750242 C1 8.1 FSC 0.143 CUT-OFF cryoSPARC v3.3.1 627748 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD cryoSPARC v3.3.1 cryoSPARC v3.3.1 emd_15215.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 0 0 0 128 128 128 406.656 406.656 406.656 90.0 90.0 90.0 X Y Z -1.183511 4.262439 0.14208034 0.61363304 3.177 3.177 3.177 2.74 AUTHOR Asymmetric reconstruction of averaged ribosomes from Saccharomyces cerevisiae emd_15215_additional_6.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 0 0 0 128 128 128 406.656 406.656 406.656 90.0 90.0 90.0 X Y Z -0.6118128 3.4379582 0.14564195 0.57618856 3.177 3.177 3.177 AUTHOR Reconstructed map of a ribosome after variability analysis showing tRNA occupation at site A/A emd_15215_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 0 0 0 128 128 128 406.656 406.656 406.656 90.0 90.0 90.0 X Y Z -0.68017143 3.4310133 0.14773436 0.57756865 3.177 3.177 3.177 AUTHOR Reconstructed map of a ribosome after variability analysis showing tRNA occupation at site A/P emd_15215_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 0 0 0 128 128 128 406.656 406.656 406.656 90.0 90.0 90.0 X Y Z -1.6328305 5.448437 0.13940737 0.6782364 3.177 3.177 3.177 AUTHOR Reconstructed map of a ribosome after variability analysis showing tRNA occupation at sites A/P P/E emd_15215_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 0 0 0 128 128 128 406.656 406.656 406.656 90.0 90.0 90.0 X Y Z -1.8823231 5.7287846 0.14006227 0.6967343 3.177 3.177 3.177 AUTHOR Reconstructed map of a ribosome after variability analysis showing tRNA occupation at sites P/E E/- emd_15215_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 0 0 0 128 128 128 406.656 406.656 406.656 90.0 90.0 90.0 X Y Z -0.8299823 3.6617246 0.1443161 0.60558015 3.177 3.177 3.177 AUTHOR Reconstructed map of a ribosome after variability analysis showing tRNA occupation at sites P/P E/E emd_15215_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 0 0 0 128 128 128 406.656 406.656 406.656 90.0 90.0 90.0 X Y Z -0.8649068 3.757346 0.14586264 0.6062102 3.177 3.177 3.177 AUTHOR Reconstructed map of a ribosome after variability analysis showing tRNA occupation at sites A/A P/P emd_15215_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 0 0 0 128 128 128 406.656 406.656 406.656 90.0 90.0 90.0 X Y Z -0.7929888 3.589405 0.07274423 0.605669 3.177 3.177 3.177 AUTHOR Asymmetric reconstruction of averaged ribosomes from Saccharomyces cerevisiae - Half Map A emd_15215_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 0 0 0 128 128 128 406.656 406.656 406.656 90.0 90.0 90.0 X Y Z -0.8024474 3.523335 0.07275396 0.6058497 3.177 3.177 3.177 AUTHOR Asymmetric reconstruction of averaged ribosomes from Saccharomyces cerevisiae - Half Map B