<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="https://ftp.ebi.ac.uk/pub/databases/em_ebi/emdb_related/emdb-schemas/emdb_schemas/v3/v3_0_9_0/emdb.xsd" version="3.0.9.0" emdb_id="EMD-14876">
    <admin>
        <current_status>
            <date>2023-12-13</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2022-05-03</deposition>
            <header_release>2022-12-28</header_release>
            <map_release>2022-12-28</map_release>
            <update>2023-12-13</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>German Research Foundation (DFG)</funding_body>
                <code>CRC1361</code>
                <country>Germany</country>
            </grant_reference>
            <grant_reference>
                <funding_body>German Research Foundation (DFG)</funding_body>
                <code>SFB1361</code>
                <country>Germany</country>
            </grant_reference>
            <grant_reference>
                <funding_body>German Research Foundation (DFG)</funding_body>
                <code>GRK1721</code>
                <country>Germany</country>
            </grant_reference>
        </grant_support>
        <title>Cryo-EM map of Chaetomium thermophilum MRN (RBD &amp; bridge)</title>
        <authors_list>
            <author ORCID="0000-0001-8382-7828">Stakyte K</author>
            <author ORCID="0000-0002-8489-697X">Rotheneder M</author>
            <author ORCID="0000-0003-3853-2347">Bartho JD</author>
            <author ORCID="0000-0002-4438-1381">Lammens K</author>
            <author ORCID="0000-0002-4528-8357">Hopfner KP</author>
        </authors_list>
        <keywords>DNA repair, complex, ATPase, coiled-coils, HYDROLASE</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author ORCID="0000-0002-8489-697X" order="1">Rotheneder M</author>
                    <author ORCID="0000-0001-8382-7828" order="2">Stakyte K</author>
                    <title>Cryo-EM structure of the Mre11-Rad50-Nbs1 complex reveals the molecular mechanism of scaffolding functions</title>
                    <journal_abbreviation>Mol.Cell</journal_abbreviation>
                    <country>US</country>
                    <year>2022</year>
                    <external_references type="ISSN">1097-2765</external_references>
                    <external_references type="CSD">2168</external_references>
                    <external_references type="ASTM">MOCEFL</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-14877</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>CtMRN focus map of Nbs1-Mre11 interaction</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-14878</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>CtMRN long coiled coils map</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-14879</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>CtMRN coiled coils focus map</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-14880</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>CtMRN catalytic head focus map</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-14881</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>CtMRN composite map</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-14882</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>CtRad50 Zn hook map</details>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Chaetomium thermophilum Mre11-Rad50-Nbs1 complex bound to ATPyS</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Chaetomium thermophilum Mre11-Rad50-Nbs1 complex bound to ATPyS</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>3</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="209285">Chaetomium thermophilum</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>Double-strand break repair protein</name>
                <natural_source database="NCBI">
                    <organism ncbi="209285">Thermochaetoides thermophila</organism>
                    <strain>DSM 1495 / CBS 144.50 / IMI 039719</strain>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="7111">Trichoplusia ni</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MPQTAGPDTIRILVSTDNHVGYEERDPIRKDDSWRTFDEIMQLARTKDVDMVLLGGDLFHDNKPSRKAMYQVMRSLRKNCLGMKPCELEFLSDPAEVFEGAFPHVNYYDPDINVSIPVFSIHGNHDDPSGDGHLCSLDLLQVAGLVNYFGRVPEADNIHVKPILLQKGKTKLALYGMSNVRDERIHRTFRDNKVRFYRPSQQTGDWFNLLTLHQNHYAHTPTGYLSENMLPDFLDLVIWGHEHECLIDPKKNPETGFHVMQPGSSIATSLVPGEAVPKHIAILSITGKSFEVEKIPLRTVRPFVIREITLATDKRFKGLEKKQDNRQEVTKRLMQIVEEMIAEANEMWRSLHEDSQDDEDEEQPLPLIRLKVEYSSPEGTKFEVENPQRFSNRFAGKVANQNDVVHFYRKKTGTTRKPKEGKRELPEGIAEALEDSDSISVDALVQEFFAQQSLKILPQAPFGDAVNQFVSKDDKHAVEMFVMDSLSSQVRGLLQLDDDKINEGLDSHIEDFRKVMEKNFLSGQQKQAQRRRRFKEKPEGWDSDLNGHWTLQPEAIEELSSSPEPAKEGGRVRPASRITVGDEDNLFEEEEFVQKTTAKRAPTTRATRKTAAATRATTATKASAPAKKSIAAPRGRKRANPFQDSAEEEEDVIMDDDDDYKPAPPVKAPPPKPARETQTRGAPKTRQTTLNFSQAERPTRTTQKAIEISDDEISEDDAFESMPARKSKRY</string>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name>DH domain-containing protein</name>
                <natural_source database="NCBI">
                    <organism ncbi="209285">Thermochaetoides thermophila</organism>
                    <strain>DSM 1495 / CBS 144.50 / IMI 039719</strain>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="7111">Trichoplusia ni</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MSKIEKLSILGVRSFGPHHPETIAFNTPLTLIVGYNGSGKTTVIECLKYATTGELPPNSTRNGAFIHDPDLVGEKEVRAQVKLSFRSTIGESYVVTRNIQLLVQRNNKRTQKTLEGSLLLRNNGERTVISTRVAELDKLVSEKLGVPPAILDAVIFCHQDDSLWPMSEPAALKKRFDEIFEAQKYTKVIENIRLLKKKKGDELKILKEREVQDKANKERAEKVDRLMAQLTREILEAREKCNELSKQMEEESAKIKDKYEQANSFLKIMNDLQTKTEKLEYKKDAIVELRSRIEELPDPDEVLRNTLDEYEQTINRIVADRDHKAAQFHDLQAELKSARDQHTAKAAEQGKHQSDKEKYERQLVARERMIREAAERHEIRGYNGDLDDRRIAIFNERIQKILNDKRRELERLQRENQEELDRKTAVIAERESRKQSVIRDRKAAKDRIISLGKDMASIQGELSSIDIDEGTEEMLRAEMKELQARIEAAKADEQNANLDAQIKEVNEEIWKLESLSAKLARELVECTRLASERAQLDLRRKQLAERKRELEIMTNTWNEQFSTLLGEGWRPETLERDFSDVLKQQQLLVGEHRKKKDATQQELKQAEYQLSNARNLHNKLTNEMEACMRAVQTAMKEARDLDSAPPVDEYITMLETDEKELAEVETALKLYDELKKHYSTIKDRALRFNKCYICDRDFTNQEAAKTRLLEKVAKRLGDEEKKELLEDQAAFMKSLDILRAVRVKYDTYQRLSSELPQLSREIDSETNRREDLVRRLEDQDLAFREADNKLQEMETLNKHVMKITQLLKDISDAEKQVERSQQLSNIETRSADEINEEQTTCAEQTRAAQAKLTKLTAEKQRLKDLVRQLEVERLQLENKISSAVQQLERKKRLQESIARHKEDQNQARNAVQEADEELERLEPEIAGARAALDEARQACRAKEQKVAAERDAIAQTVSELNMINSEIQEYLDRGGPSSLAANQRAIANLETQMANLEGEMRELTVQINKLNKEIDNSDAKKRNIADNLTYRKNLREKDALEREIAELEARNAQEDYDRLIKEAHYLEAHRSKLNADRERLMGMMSTKDEEFRRLNEEYELDLKDAKAKYKETHIKVETTKAAIEDLGRGMAAVDHAIMQYHSKMMEQINRTIAELWQSTYQGTDIDTIQIRSDVESTTSSDSGTRRNYNYRVSMVKGDTEMDMRGRCSAGQKVLASIIIRLALAESFCANCGLIALDEPTTNLDSDNIRSLAESLHGIIKARQAQGNLQLIVITHDEEFLKYMQCSDFCDDFYRVKRDEKQNSVIVRESITRITE</string>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="3">
                <name>FHA domain-containing protein</name>
                <natural_source database="NCBI">
                    <organism ncbi="209285">Thermochaetoides thermophila</organism>
                    <strain>DSM 1495 / CBS 144.50 / IMI 039719</strain>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="7111">Trichoplusia ni</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MWILESELFDGKRLWLRPGKTYLFGRTVAEAGQLTISDKTVSRKHLTIHIDNVPEGGGRNLRSRSNVIVEDLESKKGTLVNGVQIRGQKTTLTEDVNEIKLGLCPKTLKIRWHPIVLSFSFTSKELRADPWTNLRDSLEQLDIKYSAEYEPTTTHVVSKKRNTSKGLQALINGRYIVTDSFINAIVQATEIPEGEEGASSALEQDFEANWPNPLDHLPPRGEEPGNHTTETYAPDARRQEVFDGYTFIFYEKKQYDNLFPAISAGKGKALLKEVVPNRTRVDEFVRYVKSVAGEKGLGSFEDGSEGKGVVVVRYTPKGEDSAWYAEFFTKFAQQLDHRPIDQKEFLEAILACDASMLRRPLEAMSQPVSVSASVEPQSSEKVRPAVEDRKEVEQSAPKQLQPSAEVPATEESAPAPHRRERRTGRSRFKGFDFDDDDIIIETPQAQSSTQVPALPQVPSASQDSLFVSQREPSLAPSEPMLEEEAPCNTRTTRQTHRKRVLSPLPEHDNSALLDEIAPITAAVKRRRIEAGQDPVPPLPEPEPEREDEDVEMVEESPPRKGKKGAATTAKGKGKKIKQEDEENVLELARRRREEAEAAAAAERQRLAQLGDDDIDYAAIRRLHIIEEIEVRQPEPHGPNRTREQDIADGRWDPRWNGRKNFKRFRRQGETGVRMPVQSVIVPLEEVRTKEYGIGDDYWLEDEEGRVPRRPKETQTQERSTIGSVRDGSGFAAAAASGKGKEKDKENEKEVGRPGSSAAAAKQRSKPAPRRTVLTLDSSDEDEDEPSPHAPGIDTISDSEPEVVSSFPSVIPASEPSRSRAAKAAERANALRSSAHSSQSQTQQHRESQLSTGSSKIQLTLAPGSSSLSFSRSGTAAGRNENGKRPFGSFVSGESTASGRGMSVESGSVRGESASKRQKQGSSGGGSFLATRRKDDGSEEESEDDELKFRFGRRR</string>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.27</concentration>
                    <buffer>
                        <ph>7.6</ph>
                    </buffer>
                    <grid>
                        <model>Quantifoil R2/1</model>
                        <material>COPPER</material>
                        <mesh>200</mesh>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                        </pretreatment>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <c2_aperture_diameter units="µm">50.0</c2_aperture_diameter>
                    <nominal_cs units="mm">2.7</nominal_cs>
                    <nominal_defocus_min units="µm">1.0</nominal_defocus_min>
                    <nominal_defocus_max units="µm">2.8000000000000003</nominal_defocus_max>
                    <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <detector_mode>COUNTING</detector_mode>
                            <average_electron_dose_per_image units="e/Å^2">43.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <startup_model type_of_model="NONE"/>
                <final_reconstruction>
                    <resolution units="Å" res_type="BY AUTHOR">3.92</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <number_images_used>137843</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="67109">
        <file>emd_14876.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>256</col>
            <row>256</row>
            <sec>256</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>256</x>
            <y>256</y>
            <z>256</z>
        </spacing>
        <cell>
            <a units="Å">271.104</a>
            <b units="Å">271.104</b>
            <c units="Å">271.104</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.43262875</minimum>
            <maximum>1.3704091</maximum>
            <average>0.00664445</average>
            <std>0.06033254</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.059</x>
            <y units="Å">1.059</y>
            <z units="Å">1.059</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.5</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-14876::::</label>
        <annotation_details>MRN RBD &amp; bridge. Ref 3D map.</annotation_details>
    </map>
    <interpretation>
        <segmentation_list>
            <segmentation>
                <file>emd_14876_msk_1.map</file>
            </segmentation>
        </segmentation_list>
        <additional_map_list>
            <additional_map format="CCP4" size_kbytes="67109">
                <file>emd_14876_additional_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>256</col>
                    <row>256</row>
                    <sec>256</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>256</x>
                    <y>256</y>
                    <z>256</z>
                </spacing>
                <cell>
                    <a units="Å">271.104</a>
                    <b units="Å">271.104</b>
                    <c units="Å">271.104</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-1.2709595</minimum>
                    <maximum>1.3964275</maximum>
                    <average>0.0010333686</average>
                    <std>0.02764742</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">1.059</x>
                    <y units="Å">1.059</y>
                    <z units="Å">1.059</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-14876::::</label>
                <annotation_details>MRN RBD &amp; bridge. LAFTER.</annotation_details>
            </additional_map>
        </additional_map_list>
        <half_map_list>
            <half_map format="CCP4" size_kbytes="67109">
                <file>emd_14876_half_map_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>256</col>
                    <row>256</row>
                    <sec>256</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>256</x>
                    <y>256</y>
                    <z>256</z>
                </spacing>
                <cell>
                    <a units="Å">271.104</a>
                    <b units="Å">271.104</b>
                    <c units="Å">271.104</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.4758786</minimum>
                    <maximum>1.4739224</maximum>
                    <average>0.005068067</average>
                    <std>0.06653107</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">1.059</x>
                    <y units="Å">1.059</y>
                    <z units="Å">1.059</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-14876::::</label>
                <annotation_details>MRN RBD &amp; bridge. Half map B.</annotation_details>
            </half_map>
            <half_map format="CCP4" size_kbytes="67109">
                <file>emd_14876_half_map_2.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>256</col>
                    <row>256</row>
                    <sec>256</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>256</x>
                    <y>256</y>
                    <z>256</z>
                </spacing>
                <cell>
                    <a units="Å">271.104</a>
                    <b units="Å">271.104</b>
                    <c units="Å">271.104</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.4630968</minimum>
                    <maximum>1.4436553</maximum>
                    <average>0.0049599116</average>
                    <std>0.06652389</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">1.059</x>
                    <y units="Å">1.059</y>
                    <z units="Å">1.059</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-14876::::</label>
                <annotation_details>MRN RBD &amp; bridge. Half map A.</annotation_details>
            </half_map>
        </half_map_list>
    </interpretation>
</emd>
