2022-12-28 REL PDBe PDBe PDBe 2022-04-21 2022-05-04 2022-05-04 2022-12-28 Other private Switzerland SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 1) - Focused Refinement Hurdiss DL Drulyte I Rothenberger S Hurdiss DL Walser M Malvezzi F Mayor J Ryter S Moreno H Liechti N Bosshart A Iss C Calabro V Cornelius A Hospodarsch T Neculcea A Looser T Schlegel A Fontaine S Villemagne D Paladino M Schiegg D Mangold S Reichen C Radom F Kaufmann Y Schaible D Schlegel I Zitt C Sigrist G Straumann M Wolter J Comby M Sacarcelik F Drulyte I Lyoo H Wang C Li W Du W Binz HK Herrup R Lusvarghi S Neerukonda SN Vassell R Wang W Adler JM Eschke K Nascimento M Abdelgawad A Gruber AD Bushe J Kershaw O Knutson CG Balavenkatraman KK Ramanathan K Wyler E Teixeira Alves LG Lewis S Watson R Haeuptle MA Zurcher A Dawson KM Steiner D Weiss CD Amstutz P van Kuppeveld FJM Stumpp MT Bosch BJ Engler O Trimpert J The trispecific DARPin ensovibep inhibits diverse SARS-CoV-2 variants. Nat.Biotechnol. US 40 1845 1854 2022 35864170 doi:10.1038/s41587-022-01382-3 1087-0156 2119 NABIF9 EMD-14810 other EM volume
Consensus Map
 EMD-11953 other EM volume
Composite Map
 EMD-14811 associated EM volume
Focused Refinement
 EMD-11954 other EM volume SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 0 1 2 0.464 SARS-CoV-2 spike glycoprotein 1 1 Severe acute respiratory syndrome-related coronavirus Severe acute respiratory syndrome coronavirus 2 (Wuhan-Hu-1) monovalent DARPin R2 1 2 synthetic construct SARS-CoV-2 spike glycoprotein Severe acute respiratory syndrome coronavirus 2 Homo sapiens LEVO MFVFLVLLPLVSSQCVNLTT RTQLPPAYTNSFTRGVYYPD KVFRSSVLHSTQDLFLPFFS NVTWFHAIHVSGTNGTKRFD NPVLPFNDGVYFASTEKSNI IRGWIFGTTLDSKTQSLLIV NNATNVVIKVCEFQFCNDPF LGVYYHKNNKSWMESEFRVY SSANNCTFEYVSQPFLMDLE GKQGNFKNLREFVFKNIDGY FKIYSKHTPINLVRDLPQGF SALEPLVDLPIGINITRFQT LLALHRSYLTPGDSSSGWTA GAAAYYVGYLQPRTFLLKYN ENGTITDAVDCALDPLSETK CTLKSFTVEKGIYQTSNFRV QPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISN CVADYSVLYNSASFSTFKCY GVSPTKLNDLCFTNVYADSF VIRGDEVRQIAPGQTGKIAD YNYKLPDDFTGCVIAWNSNN LDSKVGGNYNYLYRLFRKSN LKPFERDISTEIYQAGSTPC NGVEGFNCYFPLQSYGFQPT NGVGYQPYRVVVLSFELLHA PATVCGPKKSTNLVKNKCVN FNFNGLTGTGVLTESNKKFL PFQQFGRDIADTTDAVRDPQ TLEILDITPCSFGGVSVITP GTNTSNQVAVLYQDVNCTEV PVAIHADQLTPTWRVYSTGS NVFQTRAGCLIGAEHVNNSY ECDIPIGAGICASYQTQTNS PAAARSVASQSIIAYTMSLG AENSVAYSNNSIAIPTNFTI SVTTEILPVSMTKTSVDCTM YICGDSTECSNLLLQYGSFC TQLNRALTGIAVEQDKNTQE VFAQVKQIYKTPPIKDFGGF NFSQILPDPSKPSKRSFIED LLFNKVTLADAGFIKQYGDC LGDIAARDLICAQKFNGLTV LPPLLTDEMIAQYTSALLAG TITSGWTFGAGAALQIPFAM QMAYRFNGIGVTQNVLYENQ KLIANQFNSAIGKIQDSLSS TASALGKLQDVVNQNAQALN TLVKQLSSNFGAISSVLNDI LSRLDPPEAEVQIDRLITGR LQSLQTYVTQQLIRAAEIRA SANLAATKMSECVLGQSKRV DFCGKGYHLMSFPQSAPHGV VFLHVTYVPAQEKNFTTAPA ICHDGKAHFPREGVFVSNGT HWFVTQRNFYEPQIITTDNT FVSGNCDVVIGIVNNTVYDP LQPELDSFKEELDKYFKNHT SPDVDLGDISGINASVVNIQ KEIDRLNEVAKNLNESLIDL LIKGSGYIPEAPRDGQAYVR KDGEWVLLSTFLIKLVPRGS LEWSHPQFEK monovalent DARPin R2 synthetic construct Escherichia coli LEVO MRGSHHHHHHGSDLGKKLLQAARAGQLDEVRELLKAGADVNAKDREGKTPLHVAAQEGHLEIVEVLLKAGADVNAKDVWGRTPLHLAAWIGHLEIVEVLLKAGADVNAKDVSGATPLHAAALHGHLEIVEVLLNAGADVNAQDKSGKTPADLAARAGHQDIAEVLQKAA singleParticle particle 2.5 8.0 ETHANE 95 277 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 1.25 2.5 75000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN
Data collected with a 30 degree stage tilt.
FEI FALCON IV (4k x 4k) 4096 4096 1 3024 40.0 1 123833 EMD-21457 6.1 FSC 0.143 CUT-OFF RELION 3.1 39311 RANDOM ASSIGNMENT CTFFIND 4 MAXIMUM LIKELIHOOD RELION 3.1 emd_14811.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 200 200 200 0 0 0 200 200 200 208.99998 208.99998 208.99998 90.0 90.0 90.0 X Y Z -0.0022116217 2.4681659 0.0059041437 0.05019739 1.045 1.045 1.045 0.199 AUTHOR DeepEMhancer sharpened map emd_14811_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 200 200 200 0 0 0 200 200 200 208.99998 208.99998 208.99998 90.0 90.0 90.0 X Y Z -0.09180553 0.22419252 0.0010784032 0.010091872 1.045 1.045 1.045 AUTHOR Local resolution filtered map emd_14811_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 200 200 200 0 0 0 200 200 200 220.0 220.0 220.0 90.0 90.0 90.0 X Y Z -0.017971389 0.061472397 0.00024790937 0.004476726 1.1 1.1 1.1 AUTHOR Unsharpened map emd_14811_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 200 200 200 0 0 0 200 200 200 220.0 220.0 220.0 90.0 90.0 90.0 X Y Z -0.030046308 0.06988705 0.00022207364 0.0053260266 1.1 1.1 1.1 AUTHOR Half map 1 emd_14811_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 200 200 200 0 0 0 200 200 200 220.0 220.0 220.0 90.0 90.0 90.0 X Y Z -0.029903904 0.08264 0.0002733986 0.005310768 1.1 1.1 1.1 AUTHOR Half map 2