REL PDBe PDBe PDBe 2008-02-24 2008-02-25 2009-03-31 2012-10-24 3D structure of the canine 80S ribosome Chandramouli P Topf M Menetret JF Eswar N Cannone JJ Gutell R Sali A Akey CW eukaryotic ribosome, protein translation, tRNA translocation, expansion segments Chandramouli P Topf M Menetret JF Eswar N Cannone JJ Gutell RR Sali A Akey CW Structure of the mammalian 80S ribosome at 8.7 A resolution. STRUCTURE 16 535 548 2008 18400176 doi:10.1016/j.str.2008.01.007 4v5z FULLOVERLAP canine 80S ribosome canine 80S ribosome
Sample was monodisperse with some mild aggregation.
monomer 1 3.6 80S ribosome
The ribosome structure was determined within a larger, ribosome-channel complex isolated from ER membranes.
false Canis lupus familiaris Dog 3.6 ribosome-eukaryote: ALL singleParticle particle 7.5
30mM Hepesm 50mM KAc, 10mM Mg acetate and 1.5% digitonin.
400
 ETHANE 90 HOMEMADE PLUNGER
Vitrification instrument: home made plunger. in cold room
blot for 1 second FEI TECNAI 20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2 0.5 3.0 50000.0 51000.0 OTHER 93
data were collected on Oxford and a Gatan cryo-holders
KODAK SO-163 FILM OTHER 4.5 500 20
Creoscitex Eversmart was used to scan negatives.
1.0 16. eucentric
Particles selected with Boxer
by micrograph
 C1 OTHER 8.7 FSC 0.5 CUT-OFF EMAN
sep option equals 3 and setsf were used in the final cycle. a combined structure factor was used to correct for amplitudes in EMAN using the low resolution region from the images and the mid-resolution region from a low angle X-ray diffraction pattern.
78800
2 degree steps between classes
 emd_1480.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 168 168 168 0 0 0 168 168 168 458.64 458.64 458.64 90 90 90 X Y Z -16.530899999999999 23.4467 0.177751 1.37771 2.73 2.73 2.73 1.0 3D volume of the canine 80S ribosome determined at 8.7 A resolution (Fsc 0.5), within the context of a ribosome-channel complex from ER membranes.
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 1j5e 1s72 1giy 1gix REAL